Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00089 ATGGAAAAGATTGTTGTTGTGATGTTTATGTTTCTAAGCATAAACATGATGATGATGAGTATTTCAGCAGCTCCATCTACATGTCCTATGGACCTTAACTATGTTCTCAGAATCCATTGGAACTCTTCTGCTTGTCAAAATTTTGACTCAAAAAAAGAAGTAAACACATCAAGCACATGTTGCATATCACTTTTATCACTTTTTGGAATAGGATTTGCACAACATCTTAAAGAAACTTCTCAATTCAATCTTCAAGACCTTCAAACTTCAATTTCATGCATGCATGATTTTCAATCAAAGCTCAATTCTTTATCACTTTCAAACAACCTTGTCAACTCTTGCTTTGACCCTCAACAATTTGTTATCTCTCGTAACTTTTGTGCAGTTCTTTATGCTGCTGGAATTGTGAATGAGTTTGGACCTGAAAGTAATGGTGCTGTTACTTGTGCTTTTAGTGTACCTGTTTATTCACAAGTTGGTTCTGGTTCAAAGGGTCATCAGGGTCTTGTGTTTGGTTTAACAGGAGCTGGTGTTGCATTGTTTGTTATGTTTTCTTTGTTGGGTTTATATGTTTGGTTTGATAGAAAACGTATCAGGAAGAGAAAGCTTGAAACTTTTCAATTTGATTTTGACCCTGAGGAACAAGGTTCTAGGCGTAGATTAAGGCCTAATACAGGTTCAATTTGGTACAAAATTCAGGAACTTGAGAAGGCTACTGATAATTTTTCATCCAAAAATTTCATAGGGAGAGGTGGGTTTGGTTTGGTTTTTAAAGGAACTTTGGCTGATAGATCTGTTGTTGCTGTTAAGAAAGTTTTAGAATCTGATTTTCAAGGGGATGCTGAGTTTTGTAATGAAGTTGAGATTATTAGTAATCTTAAGCACAGGAATTTGTTGCCTCTTAGAGGTTGTTGTGTGGTTGATGAGAATGAGAAGTGTGCTACTGATAAGGGAAGTCAAAGATATCTTGTTTATGATTATATGCCAAATGGAAACTTGGAAGATCATCTTTTTGTATCAAAGGATCCTCAAAAAGCAAACAAATCATTGACTTGGCCTCTTAGGAAAAACATAATCTTGGATGTGGCTAAGGGTTTGGCTTATTTGCACTATGGAGTTAAGCCTGCAATTTATCATAGGGATATCAAAGCAACCAACATACTACTTGATGAAGATATGAGGGCAAGAGTTGCTGATTTTGGACTTGCTAAACAAAGCAGGGAGGGTCAGTCTCATCTCACTACTAGAGTTGCCGGAACTCATGGATATTTAGCGCCGGAATATGCGCTATATGGTCAACTGACTGAGAAGAGTGATGTGTATAGCTTTGGTGTGGTTGTTTTGGAGATAATGTGTGGGAGGAAGGCTCTTGATTTGTCTTCATCAGGATCGCCGCGAGCGTTCTTGATCACGGATTGGGCTTGGTCACTAGTGAAATCGGGGAAAATAGATGAGGCTTTGGATGCTTCTCTTTTGAAAGACGATAACAACGCTAGTGCAAATCCCAAGAGCATAATGGAAAGGTATTTGCTTGTTGGAATTCTATGTTCTCATGTAATGGTTGCTTTAAGGCCAACAATTTCAGATGCTTTGAAGATGATGGAAGGTGATATCGAGGTTCCTCAAATTCCAGATAGACCTATGCCTCTCGGACATCCTTCATTTTATAATAATGATAGCAATGGAAACACTTTTAGCATATCCCCGGCATTAAGCGGCCTCAAATTGCAAGCTGGAGACATGCTCAGGTCCATTAGTGAGAGATGA 1767 0.382 MEKIVVVMFMFLSINMMMMSISAAPSTCPMDLNYVLRIHWNSSACQNFDSKKEVNTSSTCCISLLSLFGIGFAQHLKETSQFNLQDLQTSISCMHDFQSKLNSLSLSNNLVNSCFDPQQFVISRNFCAVLYAAGIVNEFGPESNGAVTCAFSVPVYSQVGSGSKGHQGLVFGLTGAGVALFVMFSLLGLYVWFDRKRIRKRKLETFQFDFDPEEQGSRRRLRPNTGSIWYKIQELEKATDNFSSKNFIGRGGFGLVFKGTLADRSVVAVKKVLESDFQGDAEFCNEVEIISNLKHRNLLPLRGCCVVDENEKCATDKGSQRYLVYDYMPNGNLEDHLFVSKDPQKANKSLTWPLRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDEDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKSGKIDEALDASLLKDDNNASANPKSIMERYLLVGILCSHVMVALRPTISDALKMMEGDIEVPQIPDRPMPLGHPSFYNNDSNGNTFSISPALSGLKLQAGDMLRSISER 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00089 588 Gene3D Phosphorylase Kinase; domain 1 213 327 - -
Trre4g00089 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 377 389 IPR008271 GO:0004672|GO:0006468
Trre4g00089 588 CDD STKc_IRAK 248 536 - -
Trre4g00089 588 FunFam probable receptor-like protein kinase At1g11050 204 327 - -
Trre4g00089 588 ProSitePatterns Protein kinases ATP-binding region signature. 248 271 IPR017441 GO:0005524
Trre4g00089 588 Pfam SPARK 23 128 IPR043891 -
Trre4g00089 588 ProSiteProfiles Protein kinase domain profile. 242 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00089 588 SMART serkin_6 242 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00089 588 Gene3D Transferase(Phosphotransferase) domain 1 328 542 - -
Trre4g00089 588 PANTHER OS01G0750732 PROTEIN 42 542 - -
Trre4g00089 588 Pfam Protein kinase domain 244 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00089 588 SUPERFAMILY Protein kinase-like (PK-like) 223 534 IPR011009 -
Trre4g00089 588 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 328 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00089 Trre-Chr4 653453 655933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00089 21 583 Receptor kinase-like Gene Family AT1G11050 57.325 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Trre4g00089 Pkinase 3.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00089 - - gmx:100806560 794.653