Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00085 ATGGGGACCAAGGCAAAGAAAGCTACTGTGAAGAAGAGTTTGAAAAAGGTCAATGCTATTAAACCATCCGAGGCTGCTGATTTTTTGCCGTTGGAAGGCGGTCCTGGTCGCAAAATTCCGAATCATAAACCGCTGGAAAATGCTTCCCCTGTTTTGTATATTGGTAGGATTCCACATGGGTTCTATGAGAAAGAGATGGAAGCTTATTTTGGACAATTTGGTACTGTCAAGAGATTGAGAATTGCCAGAAATAAAAAGACTGGAAAATCAAGACATTTTGGGTACATTGAATTTGAATCTCCCGAGGTAGCGAAAATTGTTGCCGATACTATGCACAACTATTTGCTTTTCGAACACCTTCTTCAGGTTTTCGTGGTACCTTCAGAACATGTTCATCCCAGATTATGGAAAGGATTCAATTACCGTTACAAACCTGCGGACTCTCTCCAAATTGAACGAGAGCGACATGAGAAGGAAAGAACATTGGCAGAACACAGAAAGTTGATTGATAGGGTTATGAAACGTGACCAAAAACGACGTAAAAGGATAGAGGCTGCTGGCATTGAATATGAATGTCCCAAGATTGTTGGTAACCTCCAGTCTGCTCCAAAGAAGATAAAGTTCGAAGACTGA 633 0.4123 MGTKAKKATVKKSLKKVNAIKPSEAADFLPLEGGPGRKIPNHKPLENASPVLYIGRIPHGFYEKEMEAYFGQFGTVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEHLLQVFVVPSEHVHPRLWKGFNYRYKPADSLQIERERHEKERTLAEHRKLIDRVMKRDQKRRKRIEAAGIEYECPKIVGNLQSAPKKIKFED 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00085 210 CDD RRM_NIFK_like 51 123 - -
Trre4g00085 210 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Trre4g00085 210 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 6 209 - -
Trre4g00085 210 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 119 IPR000504 GO:0003723
Trre4g00085 210 SMART rrm1_1 51 124 IPR000504 GO:0003723
Trre4g00085 210 SUPERFAMILY RNA-binding domain, RBD 31 136 IPR035979 GO:0003676
Trre4g00085 210 Coils Coil 146 171 - -
Trre4g00085 210 Gene3D - 4 124 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00085 Trre-Chr4 617831 619874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00085 52 123 Eukaryotic Initiation Factors Gene Family AT1G71770 29.167 3.86e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00085 K14838 - gmx:100814276 335.109