Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00075 ATGCCTTTAGGTTGCCCTCAATGTAAGGAAGGACTTGCACCTGAGATTCCTGAGGATCTTTACCATTTGATTAAAAAGGTTGTTTCAATCCGTAACCATCTTGAGAGGAACATAAAGGACAAGGACTCAAAGTTCAGACTCATCCTTGTTGATAGCAGAATCCACCACCTTGCTCGCTACTACAAGAAAACTAAGAAGCTTCCCCCTGTGTGGAAATATGAATCAACTACTGCCACCAACGCTTTGGTTGCTTAG 255 0.4275 MPLGCPQCKEGLAPEIPEDLYHLIKKVVSIRNHLERNIKDKDSKFRLILVDSRIHHLARYYKKTKKLPPVWKYESTTATNALVA 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00075 84 FunFam 40S ribosomal protein S13 15 84 - -
Trre4g00075 84 Pfam Ribosomal protein S15 15 75 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre4g00075 84 CDD Ribosomal_S15p_S13e 9 75 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre4g00075 84 ProSitePatterns Ribosomal protein S15 signature. 30 60 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre4g00075 84 PANTHER RIBOSOMAL PROTEIN S15P/S13E 10 80 IPR023029 -
Trre4g00075 84 Gene3D - 14 84 - -
Trre4g00075 84 SMART Ribosomal_S15_2 9 81 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre4g00075 84 SUPERFAMILY S15/NS1 RNA-binding domain 11 74 IPR009068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00075 Trre-Chr4 542215 545612 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00075 4 84 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 73.404 4.12e-41 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00075 K02953 - csv:101222584 132.109