Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00072 ATGCAACAACAACAACAACAACGTCAATCCAATTCAGCCCATGCTCCTCAGCACAATTGGTTGCAGCATGCCAATTCTCACAAAAATTTCTCGTGCCAGGCCAAGTTTTTGAGCTCCAATTTCCTCTTTTCTGACCCAACTAAGAAACCAATCGATGCCGCTGGTAATAGCAGGTTTGTAGTCCGACAAGGTCAAAATATTCAAAGACCACGGGTTGAGAAGGCTTGGCTTGCTCTTTCAAGTCTAAAGATATCTAGTAGGAATTATGTCCAACCTGGAAAATCTGTTAAAGTTACTCCTCAGTTTCACGAAGACAGGACAACAACTTCCTTCCAAGGAAGCTATGATAATGTCAATCTTAACCGGGCTGATGTCTCCGCAACTCCAACCGTCATCAATCACACTTCTCGGGTTATAGATAGTTCAGTGAACTATCACACAAAGTACACAAGCCCACCCAACGAGTCTGCAAAATGTGTAGCTGATAATATTAATATTAATGTCGATGACGACGACATACTCGAGAACATTGATGTTGACCAAATTGTTGAGAAATACCAGTCCACTTGCACTCCTCAACCTCCGGTATCCAAATTTCCTCCTGCTACACCATTTGCAGATAAGGTTAATTTTGCCGGGCAGGGGGATACTTCTTTGCCACCCGAGTTGTGCTTGGATTGCATCCACGGATACAAGTTAGGGCTATGCCCTGAAGCAGCAAGTCATTTGCAGGAATTTAAGGATAATCTTATTGCTGTCTCCAACGAACTGATTGACAATGTTGAAAATCTCAGTTCTGTGCAGATAGCAAAGCTTCGCGAAGACAGGTCACAGCTGAATAAGCAAATTCAACAACTTGAAAAATATATCCATTCCAGTAATCTTGAAGAAGAAAGACAAAAGTCACATTTTGCCACATCCATGGCACCACCTACATCTTTTGTTTATGAAACACCCCAGCGACATGTCATCAGCAGTGGACCAAATAGATATGACGGCCAGGCTTATATGGGTAATGGTACATATGAACCATCATACCAGTCTTCGTATGCCATGCCATCAGGTCCAGTAGAGAGAGAACCGTTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGATAAACGGTGGAGCAGCCGGGACTTTTCTTGGACTAAAGAGTTAGAGGTTAATAATAAGAGAGTATTTGGAAATCACTCATTTCGCCCCAACCAAAGAGAGGTAATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACCGGTGGAGGAAAAAGTCTGACCTATCAGCTACCAGCTCTCATTAATCCCGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACTTATTGCAGGCAAATATACCCGCTGCTTACTTAAGTGCCAATATGGAATGGGCTGAACAGCAGGATATCCTTAGAGAACTTAATTCTGATTATTGTAAATACAAGTTGTTATATGTTACACCCGAAAAGGTTGCCAGAAGTGACGCTCTTCTGCGACACTTGGAGAGTTTACACGTTCGTGAGTTGCTTTCAAGGATTGTAATTGACGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTGTATTGAAACAGAAATTCCCAAATACTCCCGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTCGGTCTTGTTAACTGCATTGTTTTTCGGCAAAGTTTTAATCGCCCAAATTTACGGTATTCCGTTGTCCCCAAGACCAAAAAGTGTTTGGAGGATATTGATAAATTTATCAGGGAAAATCATTTTGATGAATGTGGCATCATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGGCATAAATGTGCATTTTATCATGGGAGCATGGATCCTGATCAACGTGCTTTTGTTCAAAGGCAATGGAGCAAAGATGAGATCAATGTAATTTGTGCTACCGTGGCATTTGGAATGGGGATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGCGGACGAGCTGGTAGAGATGGTCAGAGTTCTTCCTGTGTATTGTATTATAGCTACAGTGACTATATCCGAGTTAAGCATATGTTAAGCCTAGGAGCAATAGAGCAAAGCCCAATGCCATCTGGATACAGTCGTTCAAATGCGATAAATTCAGGAAGGATACTGGAAACAAACACTGAAAACCTTTTGTGCATGGTCAGTTATTGTGAAAATGATGTGGATTGTCGGCGCCATATTCAGCTCGTTCATTTTGGGGAGAAGTTTGATTCTTCAACCTGTCAGAAAACATGTGATAATTGTGTGAAGGTCACAAGTTTCGTTGAGAAGGATGTCACCGAAATTGCAAAACAATTGGTTGAACTCGTTAAGCTAACGGGACAGAAGGTCTCAGCAACTCATATATTAGAGGTGTATCGTGGTTCCTTAAGCCAGATGGTCAAGAAACACCGACATGAGACTGTGCGTCTTCATGGTGCTGGGAAGCATCTAGCCAAGGGTGAGGCTTCCCGTATATTGCATCATCTTGTCGTTGAGGATTTTCTTGTGGAGGAGGTAAAGAAAAGCGATTTTTATGGATCAGTATCATCAGTATTGAAGGTAAATGAGACAAAGGTCCATAATGTGTTGTTTGGTGGCCAAAGAATTATATTGAGATTTCCGTCTTCTGTGAAAGCATCAAAGCCAGGGAAATGTGATATAACTCCAGCCAAAGGTTCTCTGACTTCTGGGAAGCTGAATCTTCCCCTTGACATTTCTGACCAACCTCAAACTGAAGTAGACATGAATCTAGCAGCTAATTTGTACACTGCTCTGAGGATGTTGCGGACAGCTCTTTGTAGAGAAGCTGGAGAGGGTGTTATGGCTTACCACATATTTGGCAATGCTACGTTGCAGCAGATAAGCAAGAGACTACCAAGAACAAAAGAAGAACTTCTTGATATCAATGGCATTAGCAAGACTAAAGTGAGCAAGTATGGGGATCGCTTACTGGAAACCATTGAGAAAACCATAAATGAATATTACCATACGGATAAAAACAGCAGCGGCAGCAAAGGCAGTACTGATTCTACCAAAAGAAGGCGAGAGGCAAACAGAGATCCAGATTCAAATGCGGAGGGGGATGATGATGATGATTCCTTAATCAAAAGTACCGGTCGCTCCAAGAAAAGGACGGTAAGGAGACAAATTAAAAAGGCTGAAATATATGATTCAGAAGAGGAAGATTATTACCATGGATGCCTTGATGAGGACCTAGACTGTATCAATATTGAAGATGAGGCATTAGATAAAGTAACTGGTACAGATGCTGGAGGAAGAGTACTACCGCAATGGACAGCATCTTGA 3474 0.4165 MQQQQQQRQSNSAHAPQHNWLQHANSHKNFSCQAKFLSSNFLFSDPTKKPIDAAGNSRFVVRQGQNIQRPRVEKAWLALSSLKISSRNYVQPGKSVKVTPQFHEDRTTTSFQGSYDNVNLNRADVSATPTVINHTSRVIDSSVNYHTKYTSPPNESAKCVADNININVDDDDILENIDVDQIVEKYQSTCTPQPPVSKFPPATPFADKVNFAGQGDTSLPPELCLDCIHGYKLGLCPEAASHLQEFKDNLIAVSNELIDNVENLSSVQIAKLREDRSQLNKQIQQLEKYIHSSNLEEERQKSHFATSMAPPTSFVYETPQRHVISSGPNRYDGQAYMGNGTYEPSYQSSYAMPSGPVEREPFIPKIIEVNYIEGSGDKRWSSRDFSWTKELEVNNKRVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALINPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWAEQQDILRELNSDYCKYKLLYVTPEKVARSDALLRHLESLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLRYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPDQRAFVQRQWSKDEINVICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQSSSCVLYYSYSDYIRVKHMLSLGAIEQSPMPSGYSRSNAINSGRILETNTENLLCMVSYCENDVDCRRHIQLVHFGEKFDSSTCQKTCDNCVKVTSFVEKDVTEIAKQLVELVKLTGQKVSATHILEVYRGSLSQMVKKHRHETVRLHGAGKHLAKGEASRILHHLVVEDFLVEEVKKSDFYGSVSSVLKVNETKVHNVLFGGQRIILRFPSSVKASKPGKCDITPAKGSLTSGKLNLPLDISDQPQTEVDMNLAANLYTALRMLRTALCREAGEGVMAYHIFGNATLQQISKRLPRTKEELLDINGISKTKVSKYGDRLLETIEKTINEYYHTDKNSSGSKGSTDSTKRRREANRDPDSNAEGDDDDDSLIKSTGRSKKRTVRRQIKKAEIYDSEEEDYYHGCLDEDLDCINIEDEALDKVTGTDAGGRVLPQWTAS 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00072 1157 Gene3D - 818 928 IPR036388 -
Trre4g00072 1157 Gene3D HRDC domain 969 1059 IPR044876 -
Trre4g00072 1157 FunFam ATP-dependent DNA helicase RecQ 377 594 - -
Trre4g00072 1157 Pfam HRDC domain 976 1043 IPR002121 GO:0003676
Trre4g00072 1157 Pfam RQC domain 817 933 IPR018982 GO:0006260|GO:0006281|GO:0043138
Trre4g00072 1157 FunFam Bloom syndrome, RecQ helicase 595 815 - -
Trre4g00072 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 593 861 IPR027417 -
Trre4g00072 1157 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 412 587 IPR014001 -
Trre4g00072 1157 SMART hrdc7 971 1053 IPR002121 GO:0003676
Trre4g00072 1157 SMART ultradead3 400 603 IPR014001 -
Trre4g00072 1157 Gene3D - 595 814 IPR027417 -
Trre4g00072 1157 Pfam DEAD/DEAH box helicase 406 574 IPR011545 GO:0003676|GO:0005524
Trre4g00072 1157 NCBIfam RecQ family ATP-dependent DNA helicase 396 871 IPR004589 GO:0004386|GO:0006310
Trre4g00072 1157 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 612 757 IPR001650 -
Trre4g00072 1157 SMART RQC_2 820 931 IPR018982 GO:0006260|GO:0006281|GO:0043138
Trre4g00072 1157 Pfam Helicase conserved C-terminal domain 611 717 IPR001650 -
Trre4g00072 1157 SMART helicmild6 637 718 IPR001650 -
Trre4g00072 1157 Gene3D - 368 594 IPR027417 -
Trre4g00072 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 736 IPR027417 -
Trre4g00072 1157 ProSiteProfiles HRDC domain profile. 971 1053 IPR002121 GO:0003676
Trre4g00072 1157 Coils Coil 269 296 - -
Trre4g00072 1157 MobiDBLite consensus disorder prediction 1064 1078 - -
Trre4g00072 1157 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 526 535 IPR002464 -
Trre4g00072 1157 ProSiteProfiles Rhodanese domain profile. 627 669 IPR001763 -
Trre4g00072 1157 CDD DEXHc_RecQ 395 594 - -
Trre4g00072 1157 CDD SF2_C_RecQ 595 727 - -
Trre4g00072 1157 Pfam RecQ zinc-binding 729 810 IPR032284 -
Trre4g00072 1157 MobiDBLite consensus disorder prediction 1052 1104 - -
Trre4g00072 1157 SUPERFAMILY HRDC-like 975 1047 IPR010997 GO:0000166|GO:0044237
Trre4g00072 1157 PANTHER DNA HELICASE RECQ FAMILY MEMBER 374 1062 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00072 Trre-Chr4 508110 515291 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00072 627 731 Eukaryotic Initiation Factors Gene Family AT1G72730 25.714 1.39e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00072 K10901 - gmx:100817867 1761.5