Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00071 ATGCGACCGCAACGGAAATTTTTAAAAATCTCTCTCACTCTCTTTCACGGGTTTCCTCAAATATCCATTAACCCCTTTCCCCCGAATGCTTTCCTTGCTTCATTGCAAATCCCTACTCAAATCATGCAACAACAACAACAACAACGTCAATCCAATTCAGCCCATGCTCCTCAGCACAATTGGTTGCAGCATGCCAATTCTCACAAAAATTTCTCGTGCCAGGCCAAGTTTTTGAGCTCCAATTTCCTCTTTTCTGACCCAACTAAGAAACCAATCGATGCCGCTGGTAATAGCAGGTTTGTAGTCCGACAAGGTCAAAATATTCAAAGACCACGGGTTGAGAAGGCTTGGCTTGCTCTTTCAAGTCTAAAGATATCTAGTAGGAATTATGTCCAACCTGGAAAATCTGTTAAAGTTACTCCTCAGTTTCACGAAGACAGGACAACAACTTCCTTCCAAGGAAGCTATGATAATGTCAATCTTAACCGGGCTGATGTCTCCGCAACTCCAACCGTCATCAATCACACTTCTCGGGTTATAGATAGTTCAGTGAACTATCACACAAAGTACACAAGCCCACCCAACGAGTCTGCAAAATGTGTAGCTGATAATATTAATATTAATGTCGATGACGACGACATACTCGAGAACATTGATGTTGACCAAATTGTTGAGAAATACCAGTCCACTTGCACTCCTCAACCTCCGGTATCCAAATTTCCTCCTGCTACACCATTTGCAGATAAGGTTAATTTTGCCGGGCAGGGGGATACTTCTTTGCCACCCGAGTTGTGCTTGGATTGCATCCACGGATACAAGTTAGGGCTATGCCCTGAAGCAGCAAGTCATTTGCAGGAATTTAAGGATAATCTTATTGCTGTCTCCAACGAACTGATTGACAATGTTGAAAATCTCAGTTCTGTGCAGATAGCAAAGCTTCGCGAAGACAGGTCACAGCTGAATAAGCAAATTCAACAACTTGAAAAATATATCCATTCCAGTAATCTTGAAGAAGAAAGACAAAAGTCACATTTTGCCACATCCATGGCACCACCTACATCTTTTGTTTATGAAACACCCCAGCGACATGTCATCAGCAGTGGACCAAATAGATATGACGGCCAGGCTTATATGGGTAATGGTACATATGAACCATCATACCAGTCTTCGTATGCCATGCCATCAGGTCCAGTAGAGAGAGAACCGTTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGATAAACGGTGGAGCAGCCGGGACTTTTCTTGGACTAAAGAGTTAGAGGTTAATAATAAGAGAGTATTTGGAAATCACTCATTTCGCCCCAACCAAAGAGAGGTAATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACCGGTGGAGGAAAAAGTCTGACCTATCAGCTACCAGCTCTCATTAATCCCGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACTTATTGCAGGCAAATATACCCGCTGCTTACTTAAGTGCCAATATGGAATGGGCTGAACAGCAGGATATCCTTAGAGAACTTAATTCTGATTATTGTAAATACAAGTTGTTATATGTTACACCCGAAAAGGTTGCCAGAAGTGACGCTCTTCTGCGACACTTGGAGAGTTTACACGTTCGTGAGTTGCTTTCAAGGATTGTAATTGACGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTGTATTGAAACAGAAATTCCCAAATACTCCCGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTCGGTCTTGTTAACTGCATTGTTTTTCGGCAAAGTTTTAATCGCCCAAATTTACGGTATTCCGTTGTCCCCAAGACCAAAAAGTGTTTGGAGGATATTGATAAATTTATCAGGGAAAATCATTTTGATGAATGTGGCATCATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGGCATAAATGTGCATTTTATCATGGGAGCATGGATCCTGATCAACGTGCTTTTGTTCAAAGGCAATGGAGCAAAGATGAGATCAATGTAATTTGTGCTACCGTGGCATTTGGAATGGGGATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGCGGACGAGCTGGTAGAGATGGTCAGAGTTCTTCCTGTGTATTGTATTATAGCTACAGTGACTATATCCGAGTTAAGCATATGTTAAGCCTAGGAGCAATAGAGCAAAGCCCAATGCCATCTGGATACAGTCGTTCAAATGCGATAAATTCAGGAAGGATACTGGAAACAAACACTGAAAACCTTTTGTGCATGGTCAGTTATTGTGAAAATGATGTGGATTGTCGGCGCCATATTCAGCTCGTTCATTTTGGGGAGAAGTTTGATTCTTCAACCTGTCAGAAAACATGTGATAATTGTGTGAAGGTCACAAGTTTCGTTGAGAAGGATGTCACCGAAATTGCAAAACAATTGGTTGAACTCGTTAAGCTAACGGGACAGAAGGTCTCAGCAACTCATATATTAGAGGTGTATCGTGGTTCCTTAAGCCAGATGGTCAAGAAACACCGACATGAGACTGTGCGTCTTCATGGTGCTGGGAAGCATCTAGCCAAGGGTGAGGCTTCCCGTATATTGCATCATCTTGTCGTTGAGGATTTTCTTGTGGAGGAGGTAAAGAAAAGCGATTTTTATGGATCAGTATCATCAGTATTGAAGGTAAATGAGACAAAGGTCCATAATGTGTTGTTTGGTGGCCAAAGAATTATATTGAGATTTCCGTCTTCTGTGAAAGCATCAAAGCCAGGGAAATGTGATATAACTCCAGCCAAAGGTTCTCTGACTTCTGGGAAGCTGAATCTTCCCCTTGACATTTCTGACCAACCTCAAACTGAAGTAGACATGAATCTAGCAGCTAATTTGTACACTGCTCTGAGGATGTTGCGGACAGCTCTTTGTAGAGAAGCTGGAGAGGGTGTTATGGCTTACCACATATTTGGCAATGCTACGTTGCAGCAGATAAGCAAGAGACTACCAAGAACAAAAGAAGAACTTCTTGATATCAATGGCATTAGCAAGACTAAAGTGAGCAAGTATGGGGATCGCTTACTGGAAACCATTGAGAAAACCATAAATGAATATTACCATACGGATAAAAACAGCAGCGGCAGCAAAGGCAGTACTGATTCTACCAAAAGAAGGCGAGAGGCAAACAGAGATCCAGATTCAAATGCGGAGGGGGATGATGATGATGATTCCTTAATCAAAAGTACCGGTCGCTCCAAGAAAAGGACGGTAAGGAGACAAATTAAAAAGGCTGAAATATATGATTCAGAAGAGGAAGATTATTACCATGGATGCCTTGATGAGGACCTAGACTGTATCAATATTGAAGATGAGGCATTAGATAAAGTAACTGGTACAGATGCTGGAGGAAGAGTACTACCGCAATGGACAGCATCTTGA 3597 0.4167 MRPQRKFLKISLTLFHGFPQISINPFPPNAFLASLQIPTQIMQQQQQQRQSNSAHAPQHNWLQHANSHKNFSCQAKFLSSNFLFSDPTKKPIDAAGNSRFVVRQGQNIQRPRVEKAWLALSSLKISSRNYVQPGKSVKVTPQFHEDRTTTSFQGSYDNVNLNRADVSATPTVINHTSRVIDSSVNYHTKYTSPPNESAKCVADNININVDDDDILENIDVDQIVEKYQSTCTPQPPVSKFPPATPFADKVNFAGQGDTSLPPELCLDCIHGYKLGLCPEAASHLQEFKDNLIAVSNELIDNVENLSSVQIAKLREDRSQLNKQIQQLEKYIHSSNLEEERQKSHFATSMAPPTSFVYETPQRHVISSGPNRYDGQAYMGNGTYEPSYQSSYAMPSGPVEREPFIPKIIEVNYIEGSGDKRWSSRDFSWTKELEVNNKRVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALINPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWAEQQDILRELNSDYCKYKLLYVTPEKVARSDALLRHLESLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLRYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPDQRAFVQRQWSKDEINVICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQSSSCVLYYSYSDYIRVKHMLSLGAIEQSPMPSGYSRSNAINSGRILETNTENLLCMVSYCENDVDCRRHIQLVHFGEKFDSSTCQKTCDNCVKVTSFVEKDVTEIAKQLVELVKLTGQKVSATHILEVYRGSLSQMVKKHRHETVRLHGAGKHLAKGEASRILHHLVVEDFLVEEVKKSDFYGSVSSVLKVNETKVHNVLFGGQRIILRFPSSVKASKPGKCDITPAKGSLTSGKLNLPLDISDQPQTEVDMNLAANLYTALRMLRTALCREAGEGVMAYHIFGNATLQQISKRLPRTKEELLDINGISKTKVSKYGDRLLETIEKTINEYYHTDKNSSGSKGSTDSTKRRREANRDPDSNAEGDDDDDSLIKSTGRSKKRTVRRQIKKAEIYDSEEEDYYHGCLDEDLDCINIEDEALDKVTGTDAGGRVLPQWTAS 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00071 1198 ProSiteProfiles HRDC domain profile. 1012 1094 IPR002121 GO:0003676
Trre4g00071 1198 MobiDBLite consensus disorder prediction 1093 1145 - -
Trre4g00071 1198 SMART helicmild6 678 759 IPR001650 -
Trre4g00071 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 902 IPR027417 -
Trre4g00071 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 777 IPR027417 -
Trre4g00071 1198 SMART ultradead3 441 644 IPR014001 -
Trre4g00071 1198 Pfam RecQ zinc-binding 770 851 IPR032284 -
Trre4g00071 1198 CDD SF2_C_RecQ 636 768 - -
Trre4g00071 1198 SMART hrdc7 1012 1094 IPR002121 GO:0003676
Trre4g00071 1198 Pfam RQC domain 858 974 IPR018982 GO:0006260|GO:0006281|GO:0043138
Trre4g00071 1198 Gene3D - 859 969 IPR036388 -
Trre4g00071 1198 Gene3D - 409 635 IPR027417 -
Trre4g00071 1198 Coils Coil 310 337 - -
Trre4g00071 1198 NCBIfam RecQ family ATP-dependent DNA helicase 437 912 IPR004589 GO:0004386|GO:0006310
Trre4g00071 1198 PANTHER DNA HELICASE RECQ FAMILY MEMBER 415 1103 - -
Trre4g00071 1198 CDD DEXHc_RecQ 436 635 - -
Trre4g00071 1198 ProSiteProfiles Rhodanese domain profile. 668 710 IPR001763 -
Trre4g00071 1198 FunFam Bloom syndrome, RecQ helicase 636 856 - -
Trre4g00071 1198 Pfam Helicase conserved C-terminal domain 652 758 IPR001650 -
Trre4g00071 1198 SUPERFAMILY HRDC-like 1016 1088 IPR010997 GO:0000166|GO:0044237
Trre4g00071 1198 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 567 576 IPR002464 -
Trre4g00071 1198 Gene3D HRDC domain 1010 1100 IPR044876 -
Trre4g00071 1198 Pfam DEAD/DEAH box helicase 447 615 IPR011545 GO:0003676|GO:0005524
Trre4g00071 1198 SMART RQC_2 861 972 IPR018982 GO:0006260|GO:0006281|GO:0043138
Trre4g00071 1198 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 653 798 IPR001650 -
Trre4g00071 1198 FunFam ATP-dependent DNA helicase RecQ 418 635 - -
Trre4g00071 1198 MobiDBLite consensus disorder prediction 1105 1119 - -
Trre4g00071 1198 Gene3D - 636 855 IPR027417 -
Trre4g00071 1198 Pfam HRDC domain 1017 1084 IPR002121 GO:0003676
Trre4g00071 1198 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 453 628 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00071 Trre-Chr4 507832 515291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00071 668 772 Eukaryotic Initiation Factors Gene Family AT1G72730 25.714 1.36e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00071 K10901 - gmx:100817867 1761.5