Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00068 ATGGAGAAATACGAGCTGGTTAAGGATATAGGATCTGGAAATTTTGGAGTTGCTAGACTCATGCGCAACAAACTCACCAAAGAACTCGTTGCCATGAAATACATTCAACGAGGTCCCAAGATTGATGAGAATGTTGCTAGGGAAATAATTAACCATAGAAGTCTTCGTCATCCTAATATTATTCGCTTCAAGGAGGTGGTTTTGACTCCTACACATCTTGGTATTGTTATGGAGTATGCTGCTGGTGGTGAGCTCTTTGAGCGAATTTGCAATGCTGGAAGATTCAGTGAAGATGAGGCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCACTCCATGCAAATCTGCCATCGAGACTTGAAGCTAGAGAACACCTTATTGGATGGCAGCCCTGCCCCAAGGCTCAAAATTTGTGATTTTGGTTATTCTAAGTCATCTTTGCTTCATTCTAGGCCTAAGTCAACAGTGGGAACTCCAGCCTACATAGCACCAGAGGTTCTTTCACGTAGAGAATATGACGGAAAGTTGGCTGATGTATGGTCTTGTGGAGTGACTCTTTATGTAATGCTGGTGGGAGCATACCCATTTGAGGACCAAGAGGATCCCAAAAATTTCAGGAAAACCATCAATCGAATTATGGCTGTTCAATACAAGATTCCAGATTATGTTCACATAACTCAAGACTGTAGACATCTGCTGTCTCGCATTTTTGTGGCAAATCCAGCTAGGAGAATCACCATTAAGGAAATCAAGTCCCATCCATGGTTTTTAAAGAACTTGCCTAGAGAATTGACTGAGATGGCTCAAGCTGTTTACTACAGAAAAGAAAATCCAACTTATTCTCTTCAGAGCGTTGAAGACATTATGAATATTGTCGAGGAAGCTAAGACCCAACCTCAGGCATCTAGGTCAATTGGAGGATTTGGATGGGGAGGAGAAGAAGACGGCGATGAAACAAAAGAAGCAGAGGCTGAGGCGGAAGATGAATATGAAAAGAGAGTCAAGGAGGCACAGGAAAGCGGAGAAATTCATGTCAACTAA 1053 0.4245 MEKYELVKDIGSGNFGVARLMRNKLTKELVAMKYIQRGPKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLGIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTINRIMAVQYKIPDYVHITQDCRHLLSRIFVANPARRITIKEIKSHPWFLKNLPRELTEMAQAVYYRKENPTYSLQSVEDIMNIVEEAKTQPQASRSIGGFGWGGEEDGDETKEAEAEAEDEYEKRVKEAQESGEIHVN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00068 350 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
Trre4g00068 350 MobiDBLite consensus disorder prediction 330 350 - -
Trre4g00068 350 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Trre4g00068 350 MobiDBLite consensus disorder prediction 304 350 - -
Trre4g00068 350 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00068 350 PANTHER SERINE/THREONINE KINASE 2 301 - -
Trre4g00068 350 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Trre4g00068 350 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Trre4g00068 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Trre4g00068 350 CDD STKc_SnRK2 3 259 - -
Trre4g00068 350 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00068 350 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Trre4g00068 350 SUPERFAMILY Protein kinase-like (PK-like) 2 295 IPR011009 -
Trre4g00068 350 Coils Coil 324 344 - -
Trre4g00068 350 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00068 Trre-Chr4 497579 500367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00068 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 43.704 1.61e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trre4g00068 Pkinase 2.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00068 K14498 - gmx:100812259 622.083