Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00060 ATGGGGAAATTCTTGAAACCTAACAAGGCAGTTATTGTCCTTCAAGGCCGTTATGCCGGCAAAAAGGCGGTGATCGTTCGTACCTTCGACGACGGTACACGTGAGAGGCCATACGGACACTGTCTTGTTGCCGGAATCAAGAAGTACCCTAGCAAGGTGATCAAGAAGGACTCTGCTAAGAAGACGGCGAAGAAATCTAGGGTTAAGGCCTTCGTGAAGCTCGTGAACTATCAGCATTTGATGCCAACTCGTTACACTCTGGATGTGGATCTGAAGGATACTGTTGTTCCTGATGTTCTTCAAGCGAAAGACAAGAAGGTGACGGCGCTCAAGGAGACTAAGAAGCGTTTGGAGGAGAGGTTCAAGACTGGCAAGAACAGGTGGTTTTTCACCAAGCTTCGTTTCTGA 408 0.4804 MGKFLKPNKAVIVLQGRYAGKKAVIVRTFDDGTRERPYGHCLVAGIKKYPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDTVVPDVLQAKDKKVTALKETKKRLEERFKTGKNRWFFTKLRF 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00060 135 Pfam Ribosomal L27e protein family 52 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Trre4g00060 135 ProSitePatterns Ribosomal protein L27e signature. 124 135 IPR018262 GO:0003735|GO:0005840|GO:0006412
Trre4g00060 135 PANTHER 60S RIBOSOMAL PROTEIN L27 1 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Trre4g00060 135 Coils Coil 100 127 - -
Trre4g00060 135 FunFam 60S ribosomal protein L27 1 135 - -
Trre4g00060 135 SMART kow_9 4 31 IPR005824 -
Trre4g00060 135 SUPERFAMILY Translation proteins SH3-like domain 3 135 IPR008991 -
Trre4g00060 135 CDD KOW_RPL27 6 88 IPR041991 -
Trre4g00060 135 Gene3D - 1 135 IPR038655 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00060 Trre-Chr4 455973 456380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00060 1 135 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 82.222 4.28e-80 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00060 K02901 - gmx:100793982 251.906