Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00057 ATGGAGACTCACTTCAATCACACTCTCTTCGAGAGGCGCCCCTTTCTCAAGTCCAAAGCTCCTGCAGTTAAATGGGTCAAACAATGGGTTCCCCAAGATGTTGTGGCTACTGGTGGGAAGTGCATGCTCTTAAGATGGGTAACAGAGGACACCATAAAGGCCTTGAAAGAGAAGGAGAAAGAACCTTTAGCTCCGGAGCCAGAACCCGAGCCAACTACTGAAGTACTTTTCCTTTGCAGCTATGAAGGCTGTGGAAAGACATTTATTGATGCTGGTGCTTTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATTTGTTTGCCATTACGAGGGGTGTGGAAAGAAATTTCTTGACAGCTCAAAGTTAAAAAGACATTTCCTAATTCATACAGGGGAGAGGGATTTCGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCTTGGACTTTAACCTGAGGTCTCACATGAAGACACATTCACAAGAGAACTATCATATTTGCCCATACCCGGATTGTGGGAAGAGATACGCTCATGAATACAAGCTAAAGAATCACATTGCTTCTCATCATGAAAAGAGTACACCTACAATGGATGTGACGCCTAAGTATACCACTCCTCCTTCAGAAAAACAAACAAAAACCGCTAAACCTTCTGGGGCAACATACGGTTCAGCATCCTCTGATCGCCCATATGCATGTCCTTATGAAGGGTGTGAAAAAGCATACATTCATGAGTACAAGCTTAAACTGCATTTGAAGAGGGAGCATCCTGGCCACATAAATGATGAAAATGCCATGCATGCTCTGGCTAATAATGCTGAAAATGAAATGGATGAAGCAAGTGATCATGATGCTTATGGTGGGAAACGTTCCAACGGTAAAAGTCAGAAGCAAAGTAGGCCCAAGCCAAACTTGAAAATGCCTCCTTCCAAAGTTGCGCAGCGAAAAGGGTCCACTCCAACTCCTGCCACTTTTAATATGGTTAAAAAACCTTGGCCAGTGAAAGATGAAACTTATGATGAAGACAGCGAAGAAACAGAGGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCTGGAAACAACGACGATGATGATGAGGAAACAGAATATGAAGACTGA 1128 0.4388 METHFNHTLFERRPFLKSKAPAVKWVKQWVPQDVVATGGKCMLLRWVTEDTIKALKEKEKEPLAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKSTPTMDVTPKYTTPPSEKQTKTAKPSGATYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHINDENAMHALANNAENEMDEASDHDAYGGKRSNGKSQKQSRPKPNLKMPPSKVAQRKGSTPTPATFNMVKKPWPVKDETYDEDSEETEEDRDNVEDGWRYAGNNDDDDEETEYED 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00057 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 196 IPR013087 -
Trre4g00057 375 Gene3D Classic Zinc Finger 205 277 - -
Trre4g00057 375 SUPERFAMILY beta-beta-alpha zinc fingers 227 255 IPR036236 -
Trre4g00057 375 SMART c2h2final6 136 160 IPR013087 -
Trre4g00057 375 SMART c2h2final6 166 190 IPR013087 -
Trre4g00057 375 SMART c2h2final6 232 257 IPR013087 -
Trre4g00057 375 SMART c2h2final6 77 101 IPR013087 -
Trre4g00057 375 SMART c2h2final6 106 130 IPR013087 -
Trre4g00057 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Trre4g00057 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Trre4g00057 375 MobiDBLite consensus disorder prediction 188 229 - -
Trre4g00057 375 MobiDBLite consensus disorder prediction 277 375 - -
Trre4g00057 375 MobiDBLite consensus disorder prediction 198 226 - -
Trre4g00057 375 FunFam Zinc finger transcription factor YY1 207 275 - -
Trre4g00057 375 FunFam zinc finger transcription factor YY1 77 102 - -
Trre4g00057 375 Gene3D Classic Zinc Finger 77 102 - -
Trre4g00057 375 Gene3D Classic Zinc Finger 134 161 - -
Trre4g00057 375 FunFam zinc finger transcription factor YY1 163 194 - -
Trre4g00057 375 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Trre4g00057 375 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Trre4g00057 375 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Trre4g00057 375 FunFam Zinc finger protein 410 134 161 - -
Trre4g00057 375 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Trre4g00057 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 262 IPR013087 -
Trre4g00057 375 Gene3D Classic Zinc Finger 103 133 - -
Trre4g00057 375 Gene3D Classic Zinc Finger 163 195 - -
Trre4g00057 375 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Trre4g00057 375 MobiDBLite consensus disorder prediction 277 291 - -
Trre4g00057 375 FunFam Putative zinc finger protein 143 103 133 - -
Trre4g00057 375 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 354 - -
Trre4g00057 375 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Trre4g00057 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Trre4g00057 375 ProSitePatterns Zinc finger C2H2 type domain signature. 234 257 IPR013087 -
Trre4g00057 375 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Trre4g00057 375 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00057 Trre-Chr4 436403 439984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00057 10 361 C2H2 Transcription Factor Family AT4G06634 66.667 1.51e-149 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre4g00057 zf-C2H2 0.0089 CL0361