Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00056 ATGGAACTGTCAACAGATTTGCAACAAAACAACAACAAGAAGCAGAAAAGAGGCACCACCACTCATCCCCACCACCAACAACAACAACAACAAGAATCATCTTCTCCTCCACCTTCAAATTCTCATTCACAGCAACACCATCTTGTGGTCCCTTTTGATGGAAGACCATCATCTTTCCTTATGGGTTCCATCTCCAACAACAACTCTTCCTCTCCAACCAATTCATCTTCTTCCTCTGCTTCAGCTTTTGCAATTGACGCTTCTCTCGCTATTGCTACCAGATCTGAACCACCTTCTCTTCTTCATTCCACCAATAACAATAATAACCAAATTCAACAATTCTCTTCTTCCACCTCCACCACCACCACCACCGCCGTCGCCGTTGCTAATCCTCCTCCTAAACGATCCACCAAGGACAGACACACCAAAGTCGACGGTCGTGGTAGGAGAATTCGAATGCCTGCGACATGTGCTGCAAGAGTTTTCCAGTTGACCAGAGAATTAGGCCACAAATCCGACGGTGAAACAATTGAGTGGCTTCTTCAACAAGCGGAGCCTGCTATAATCGCCGCAACAGGAACCGGAACAATTCCCGCAAATTTCTCAACGCTCAACGTCTCACTCAGAAGCAGTGGCTCAACGCTGTCGGCGCCGCCGTCGAAATCAGCTCCTCATAGTTTTCACAGCGCGCTTGCACTGGCTCATCATCCTTATGAAGAAGCTGCGTACCAACACACGCCACTGTTAGGGTTTCATCCTCATCAACACCAGCAACAGCTCATGAACGCCGATCAAATCGGTGAAGCGCTTTCAAATGAGAATTATATGAGAAAACGGTATAGAGAAGATCTTTTCAAAGACGATAACAACCAAAACGAAAGTGGTGACGGTGATGGTTCTTCTAATTCTCCCAAAGGTTTCAAAACAAACCACCAACAAGATGGAATGGGAGAAGGTGAAGGTGGAGGAGGAGGAGCTTCTTCATCTGCTTCTTCCGGTGGAAATTCTATTTCTGGACTTCTTCGACCACCACCGTCAAATATGTTACCGGCAACAGCCATGTGGGCCACGGCGGGGAGTGGAAACACAATATGGATGGTACCGGTGAGTGGCGGCGGCGGAAACGCAAATACAAATTCAGAGACACAGACACAAAACATGTGGCCTTTTAGTCCTCATCATCATCATCATAATCAGCAACAAGGAACACCGTCGTCTCAGTTGCATTTGATGCCGAGGTTCAATGTTCCAGCAGGTTCAGGTGTTGAATTTGAAGGTGGACGTGGTGGTGCTGCAGCAGCAGTAGGTGGTTTACAATTGGGTTCTTCTGTTTATCATCAACCAGCAGCACCTTCGCAGCATATTGGATTGGCAGTGTCTGATTCAAATTTGGGTATGTTGGCTGCTCTTAATGCTTATACAAGAGCTGCTGCTGGTCATTTCAATAATTCTTCTTCATCAGATCATCATCCTCATAATTCTCAGCCACAAACTAGTCGTCACGATGAGAGTGGATCAGAAGATGCTCCTAATAATAATAATAATAATACCTCACAATGA 1560 0.4603 MELSTDLQQNNNKKQKRGTTTHPHHQQQQQQESSSPPPSNSHSQQHHLVVPFDGRPSSFLMGSISNNNSSSPTNSSSSSASAFAIDASLAIATRSEPPSLLHSTNNNNNQIQQFSSSTSTTTTTAVAVANPPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFHSALALAHHPYEEAAYQHTPLLGFHPHQHQQQLMNADQIGEALSNENYMRKRYREDLFKDDNNQNESGDGDGSSNSPKGFKTNHQQDGMGEGEGGGGGASSSASSGGNSISGLLRPPPSNMLPATAMWATAGSGNTIWMVPVSGGGGNANTNSETQTQNMWPFSPHHHHHNQQQGTPSSQLHLMPRFNVPAGSGVEFEGGRGGAAAAVGGLQLGSSVYHQPAAPSQHIGLAVSDSNLGMLAALNAYTRAAAGHFNNSSSSDHHPHNSQPQTSRHDESGSEDAPNNNNNNTSQ 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00056 519 MobiDBLite consensus disorder prediction 294 310 - -
Trre4g00056 519 MobiDBLite consensus disorder prediction 481 519 - -
Trre4g00056 519 MobiDBLite consensus disorder prediction 1 79 - -
Trre4g00056 519 MobiDBLite consensus disorder prediction 1 47 - -
Trre4g00056 519 ProSiteProfiles TCP domain profile. 137 191 IPR017887 -
Trre4g00056 519 MobiDBLite consensus disorder prediction 285 345 - -
Trre4g00056 519 MobiDBLite consensus disorder prediction 59 79 - -
Trre4g00056 519 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 23 467 IPR005333 GO:0003700
Trre4g00056 519 MobiDBLite consensus disorder prediction 97 147 - -
Trre4g00056 519 Pfam TCP family transcription factor 136 283 IPR017887 -
Trre4g00056 519 MobiDBLite consensus disorder prediction 325 342 - -
Trre4g00056 519 MobiDBLite consensus disorder prediction 97 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00056 Trre-Chr4 419554 421113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00056 134 395 TCP Transcription Factor Family AT1G35560 49.627 2.55e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre4g00056 TCP 6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00056 - - adu:107482753 383.645