Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00034 ATGATCCCTTTTACCTTAATTGTTTTTACTCTGTTTTCCTCTGTTTTTGCTTCATCCTTGTTCAGTGATTTTCATGCTCTAGTCACACTTAGAGAAGGATTTCAATACCCAAACCCAGTTATAAACACATGGAACACTTCCAATTTCACCTCAGTATGTTCATGGATTGGAATTCAATGCCATGAGGGCCGAGTTATCTCGGTAGACTTAACAGATTTGAATCTGTTTGGCTCTGTTTCACCTTCAATTTCATCACTTGATAAACTCACACACCTTTCCCTTGCAGGCAACAACTTCACAGGAACCATTCACATAACAAACTTAACCAGCCTTCAATTTCTAAACATTTCCAATAACCAGTTCAGTGGTTACATGGATTGGAACTTCTCCACCATGGAAAACCTTCAAGTTGTTGATGTCTATAACAATAACTTCACTTCTTTGCTTCCATTGGGACTTGTTAGTTTGAAGAAAAGCCTCAAATACTTGGATCTTGGTGGTAACTTTTTCTACGGCGAAATACCGAAAAGCTATGGAAAATTTGTGTCTCTTGAGTATCTGTCACTTGCTGGAAATGATATTACTGGGAAAATACCTGGTGAGTTGGGGAATCTTAGTAACTTAAGAGAGATTTACTTGGGCTATTACAATTCTTTTGAAGGTGGAATTCCAAAGGAGTTTGGAAAGCTAACAAATTTGGTTCACATGGATCTTTCAAGCTGTGACTTAGATGGTTCAATACCAAGAGAGTTAGGTAACTTGAAAGAGCTCAACACACTTTATTTGCATATAAACCAGCTTTCAGGTTCAATACCGAAACAACTTGGTAACTTGAAAAACTTGCTCTACCTTGACCTTTCAAGCAATGCACTCACAGGTGAAATCCCTTATGAGTTCATCAACCTTAACCGTCTCAAGCTTTTCAATCTTTTCTTGAACAGGTTACATGGTTCTATACCTGACTACATTGCAGATTTTCCTGATTTAGACACACTTGGACTTTGGATGAACAACTTTACAGGTGAAATTCCACACAAACTTGGTCTTAATGGAAAGCTTCAAGGACTTGACTTGTCCTCTAATAAACTCACTGGTGTCATTCCACCTCATCTTTGTTCCTCAAACCAGCTTAAGATTTTGATTCTTCTCAATAATTTTCTCTTTGGTCCCATACCTGAAGGCCTAGGAACATGTTACAGTCTAACTAGAGTAAGGTTAGGAGAGAATTACCTTAATGGTAGCATACCAAATGGTTTTCTTTACCTTCCTAAGCTAAATTTAGCAGAGTTGAAAAATAATTACTTGTCAGGAGAATTGTCAGAAAATGGTAATAGTTCCTCTATGCCTGTTTGTTTAGAACAACTTGATTTGTCAAACAATGCCTTGTCTGGTCCTTTACCACATTCCCTCTCAAATTTCACTTCCCTTCAAATCCTTTTGCTTAGTGGAAACCAATTCTCAGGTCCAATTCCAAGTTCAATTGGAGGACTAAATCAAGCGCTCAAGCTCGACCTTAGCAGAAACTCGTTATCCGGTGAAATTCCACCCGAAATTGGATTTTGTGTTCATCTTACATACCTTGACATGAGCCAGAACAATCTCTCTGGCTCCATCACACCATTGATTTCCAACGTCCGTATTTTGAATTACTTGAACTTGTCTAGAAACCATTTGAACCAAACCATCCCAAGATCAATAGGGACAATGAAAAGCCTCACAGTTGCTGATTTCTCATTCAACGAATTCTCTGGCAAATTGCCTGAGTCAGGTCAATTTGCATTCTTTAACGCTTCTTCGTTTGCAGGAAATCCTAAACTATGTGGTTCTCTATTGAACAATCCATGTAAGCTAACAAGAATGAAATCCACACCAGGAAAAAGTTCTGCAGATTTCAAGCTGATATTCGCGCTAGGACTATTGATGTGTTCGTTAGTGTTTGCAATTGCAGCCATTATAAAAGCCAAGTCATTCAAAAAGAAAGGACCTGGTTCTTGGAAAATGACTGCTTTTCAAAAGCTCGAATTCACAGTTTCGGACATCCTCGAGTGCGTTAAAGATGGGAATGTGATTGGAAGAGGAGGTGCAGGGATTGTTTACCATGGGAAAATGCCAAATGGGATGGAAATAGCAGTGAAAAAGTTACTTGGGTTTGGTGCAAATAGCCATGATCATGGTTTTCGAGCTGAAATTCAAACACTTGGAAACATAAGGCACAGAAACATAGTGAGGTTACTTGCATTCTGTTCAAACAAAGAAACAAATTTGCTTGTGTATGAATACATGAAAAATGGGAGCTTAGGTGAGGCATTGCATGGGAAAAAAGGTGGATTCTTGAGTTGGAATTTTAGGTACAAAATATCTATTGAGTCTGCTAAAGGACTCTGCTACCTTCACCATGATTGTTCTCCTTTGATCCTACATAGAGATGTGAAATCCAATAACATTTTGTTGAGTTCAAATTTTGAAGCACATGTGGCTGATTTTGGTCTTGCAAAGTTCTTGGTTGATGGTGCTGCATCCGAGTGCATGTCTTCAATTGCAGGCTCATATGGCTACATTGCACCTGAATATGCTTATACATTGAGAGTGGATGAAAAGAGTGATGTTTATAGTTTTGGAGTTGTTCTACTAGAGCTTCTAACAGGAAAGAAACCAGTAGGTGATTTTGGAGAAGGTGTGGATCTTGTACAATGGTGCAAAAAAGCAACCAATGGAAGAAGAGAAGAGGTTGTGAACATAGTTGATTCAAGACTCATGGTGGTGCCAACAGAAGAAGCCATGCACATGTTCTTCATTGCCATGTTATGCTTAGAAGAAAATAGTGTACAAAGACCAACCATGAGAGAAGTTGTTCAGATGCTTTCTGAATTTCCTAGATCAATGTCATCTGATCAACAATCTTCTTCTTCTAGTCATCCACCAACCAAAAAGTTAATTCAGAATGATAAATTACCTTGTCCTCCTACTTTTAAACAAGACCTTTTGGTTTAA 2991 0.3838 MIPFTLIVFTLFSSVFASSLFSDFHALVTLREGFQYPNPVINTWNTSNFTSVCSWIGIQCHEGRVISVDLTDLNLFGSVSPSISSLDKLTHLSLAGNNFTGTIHITNLTSLQFLNISNNQFSGYMDWNFSTMENLQVVDVYNNNFTSLLPLGLVSLKKSLKYLDLGGNFFYGEIPKSYGKFVSLEYLSLAGNDITGKIPGELGNLSNLREIYLGYYNSFEGGIPKEFGKLTNLVHMDLSSCDLDGSIPRELGNLKELNTLYLHINQLSGSIPKQLGNLKNLLYLDLSSNALTGEIPYEFINLNRLKLFNLFLNRLHGSIPDYIADFPDLDTLGLWMNNFTGEIPHKLGLNGKLQGLDLSSNKLTGVIPPHLCSSNQLKILILLNNFLFGPIPEGLGTCYSLTRVRLGENYLNGSIPNGFLYLPKLNLAELKNNYLSGELSENGNSSSMPVCLEQLDLSNNALSGPLPHSLSNFTSLQILLLSGNQFSGPIPSSIGGLNQALKLDLSRNSLSGEIPPEIGFCVHLTYLDMSQNNLSGSITPLISNVRILNYLNLSRNHLNQTIPRSIGTMKSLTVADFSFNEFSGKLPESGQFAFFNASSFAGNPKLCGSLLNNPCKLTRMKSTPGKSSADFKLIFALGLLMCSLVFAIAAIIKAKSFKKKGPGSWKMTAFQKLEFTVSDILECVKDGNVIGRGGAGIVYHGKMPNGMEIAVKKLLGFGANSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMKNGSLGEALHGKKGGFLSWNFRYKISIESAKGLCYLHHDCSPLILHRDVKSNNILLSSNFEAHVADFGLAKFLVDGAASECMSSIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGKKPVGDFGEGVDLVQWCKKATNGRREEVVNIVDSRLMVVPTEEAMHMFFIAMLCLEENSVQRPTMREVVQMLSEFPRSMSSDQQSSSSSHPPTKKLIQNDKLPCPPTFKQDLLV 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00034 996 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 218 323 - -
Trre4g00034 996 SMART serkin_6 684 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00034 996 Pfam Leucine Rich repeat 521 536 IPR001611 GO:0005515
Trre4g00034 996 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 129 217 - -
Trre4g00034 996 Gene3D Transferase(Phosphotransferase) domain 1 761 979 - -
Trre4g00034 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Trre4g00034 996 ProSiteProfiles Protein kinase domain profile. 684 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00034 996 Pfam Protein tyrosine and serine/threonine kinase 687 954 IPR001245 GO:0004672|GO:0006468
Trre4g00034 996 FunFam Leucine-rich repeat receptor-like kinase 22 127 - -
Trre4g00034 996 SUPERFAMILY Protein kinase-like (PK-like) 675 954 IPR011009 -
Trre4g00034 996 MobiDBLite consensus disorder prediction 958 977 - -
Trre4g00034 996 SMART LRR_typ_2 351 374 IPR003591 -
Trre4g00034 996 SMART LRR_typ_2 278 302 IPR003591 -
Trre4g00034 996 SMART LRR_typ_2 132 155 IPR003591 -
Trre4g00034 996 SMART LRR_typ_2 473 497 IPR003591 -
Trre4g00034 996 SMART LRR_typ_2 545 569 IPR003591 -
Trre4g00034 996 SMART LRR_typ_2 108 131 IPR003591 -
Trre4g00034 996 SMART LRR_typ_2 230 254 IPR003591 -
Trre4g00034 996 SMART LRR_typ_2 181 205 IPR003591 -
Trre4g00034 996 SUPERFAMILY L domain-like 351 608 - -
Trre4g00034 996 Gene3D Ribonuclease Inhibitor 129 215 IPR032675 -
Trre4g00034 996 Gene3D Phosphorylase Kinase; domain 1 649 760 - -
Trre4g00034 996 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 653 760 - -
Trre4g00034 996 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 761 971 - -
Trre4g00034 996 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 337 955 - -
Trre4g00034 996 Gene3D Ribonuclease Inhibitor 216 317 IPR032675 -
Trre4g00034 996 Gene3D Ribonuclease Inhibitor 321 618 IPR032675 -
Trre4g00034 996 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 330 619 - -
Trre4g00034 996 Gene3D Ribonuclease Inhibitor 22 128 IPR032675 -
Trre4g00034 996 SUPERFAMILY RNI-like 67 388 - -
Trre4g00034 996 MobiDBLite consensus disorder prediction 958 996 - -
Trre4g00034 996 Pfam Leucine rich repeat N-terminal domain 22 60 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00034 Trre-Chr4 291072 295841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00034 17 976 Receptor kinase-like Gene Family AT5G65700 57.275 0.0 1084
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre4g00034 PK_Tyr_Ser-Thr 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00034 - - cit:102612034 1492.63