Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00030 ATGGAGAAAACGGGTGATGAGTCTCCCAAGAATAAAGTAAAATTCCTTTGCAGTTATGGTGGAAAGGTTCTTCCAAGACCCTCCGATGGGGTCCTTAAGTATGTCGGTGGCGAGACTCGCATCATATGTGTCCCTCGCGACGTCACTTTCTCCGAGATGATGAAGAAGGTGAGCGGCATGGTTGATGGAGAGGTGGTGTTCAAGTACCAGGTGATCCCTGAAGAACTTGATGCATTGGTAACGGTTAAAACAGATGAGGATCTGAAGCACATGATTGAGGAACACGATCGCCATGGGACCGGTGGATCCCCATTGCTTCGTGCATTTCTATTCCCTTCAAAGCCGCTCTTGGTTGACACACAGGTTCAAATGCAAGGGCAACCGGTAGCACCACATCCAGTACTATCTGTTGAACCATATTGGTTAGAGCAACGTTACATTGATGCCATCAATGGAATAGCCCGGCGGACAAGCCCCAGATCTAAGTTTGCGCCGCGCTCTGCATGTTCTTCGCCAAAATCAACCTCCCCAGATGGACATACTGACGTCGAATCGCCCTTCCACCCCGGTTTGCAGCAGTTACAGCAGGGTAAGGTTACAATGCAAAGAGTGAGAAGCTCTCCAAGTCTATCAAACCTAACAAGCACCAGCAGCAACAATTCACAATCATCACTGCAGCCACTTGATCATGGTGTTTGTAGTAGTAATCATTCTTCTTTACAAAAAAGTAGTAGTTGTCATCATTATCACCATCACCACCAGCACCCTCTTGTTGGATTTAGACCCATACAAGAACAAGGGATGGGAAGGTCATCTCTATTGAATATGAATATGAATATGAATATGAATATGATGATGGATAATAATAATAATAATAATAATAATAATTTGAGTAGGAATACTAGCAGCAGTAGTAGGGGTGTTAATTACTATTACTCCACTGCAAGCAGACCCCATAAAGCGTATGCATATCATGATGACTCTGCCCCCGGTCATATTAAGGTTGAAAGAGTTCACTCCGTCCCCCGAAGTCCCAAAATGTCTATATGGGAATGA 1056 0.447 MEKTGDESPKNKVKFLCSYGGKVLPRPSDGVLKYVGGETRIICVPRDVTFSEMMKKVSGMVDGEVVFKYQVIPEELDALVTVKTDEDLKHMIEEHDRHGTGGSPLLRAFLFPSKPLLVDTQVQMQGQPVAPHPVLSVEPYWLEQRYIDAINGIARRTSPRSKFAPRSACSSPKSTSPDGHTDVESPFHPGLQQLQQGKVTMQRVRSSPSLSNLTSTSSNNSQSSLQPLDHGVCSSNHSSLQKSSSCHHYHHHHQHPLVGFRPIQEQGMGRSSLLNMNMNMNMNMMMDNNNNNNNNNLSRNTSSSSRGVNYYYSTASRPHKAYAYHDDSAPGHIKVERVHSVPRSPKMSIWE 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00030 351 MobiDBLite consensus disorder prediction 202 243 - -
Trre4g00030 351 Pfam PB1 domain 32 112 IPR000270 GO:0005515
Trre4g00030 351 PANTHER OS05G0427100 PROTEIN-RELATED 5 315 - -
Trre4g00030 351 MobiDBLite consensus disorder prediction 202 250 - -
Trre4g00030 351 MobiDBLite consensus disorder prediction 158 189 - -
Trre4g00030 351 SMART PB1_new 27 113 IPR000270 GO:0005515
Trre4g00030 351 MobiDBLite consensus disorder prediction 163 181 - -
Trre4g00030 351 Gene3D - 33 111 - -
Trre4g00030 351 SUPERFAMILY CAD & PB1 domains 28 115 - -
Trre4g00030 351 CDD PB1_UP2 16 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00030 Trre-Chr4 232116 233275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00030 12 160 MAP Kinase Kinase Kinase AT5G57610 45.333 9.59e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00030 - - tpra:123910761 535.413