Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00023 ATGGGTGTTTCCAACAAAACTCCTCAATTTCTCAAGATGAACCCTATTGGAAAGGTTCCTGTATTGGAAACCCCTGATGGTCCTGTCTTTGAGAGCAATGCCATTGCTCGCTACGTTGCCCGATCGGGTGAAAACAGTTTGTTTGGATCATCTCCCATTGATCAGGCCCACGTTGATCAGTGGATTGATTTTTCTTCTCTGGAGATTGATGCCAATATTATGAAGTTGTACCTCCCAAGACTTGGATTTGCCCCTTACCTTCCTCCAGCAGAGGAGGCTGCAATTGCTGCATTGAAGAGATCATTTGAGGCTTTGAACACCCACCTTGTCCACAATACCTATCTGGTTGGGGATTCTGTTACCCTTGCTGACATCATTACAACAGCCAACTTGTATTTGGGTTTCTCTAAACTCTTAGTCAAAAGTTTCACCTCAGAGTTTCCTCATGTTGAGAGATACTTCTGGACCTTGGTCAACCAGCCAAATTTCCGAAAGATTTTGGGCCAGGTTAAGCAGACTGAAGCTATGCCACCTATTCAATCTGCAAAGAAGCCTGCCCAGCCTAAGGAATCAAAGCCCAAGACCAAAGAAGAACCAAAGAAAGTGGCTAAATCAGAGCCCGAAAAGCCCAAGGAAGAAGCTGAAGAGGAGGCACCCAAGCCCAAACCCAAGAATCCTCTTGATCTTCTTCCTCCAAGCAAGATGGTATTGGATGACTGGAAAAGACTCTACTCTAACACTAAGACTAACTTCCGTGAGGTTGCTGTCAAAGGATTTTGGGACATGTATGATCCAGAGGGATATTCTCTCTGGTTCTGTGACTACAAATACAATGATGAGAACACTGTTTCTTTTGTGACATTGAACAAGGTTGGAGGATTTCTTCAGAGGATGGATCTTGCTCGCAAGTATGCATTTGGAAAGATGCTTGTGATTGGATCAGAGCCTCCATTTAAGGTGAAGGGATTGTGGCTTTTCCGTGGTCAAGAGATTCCAAAGTTTGTCATGGATGAATGCTATGACATGGAGCTGTATGAGTGGACCAAGGTTGACATCTCTGACGAAGCTCAAAAAGAGCGTGCCAGTCAGATGATTGAAGATGCTGAACCATTTGAGGGTGAGGCTCTTTTGGATGCCAAGTGCTTTAAGTGA 1152 0.4453 MGVSNKTPQFLKMNPIGKVPVLETPDGPVFESNAIARYVARSGENSLFGSSPIDQAHVDQWIDFSSLEIDANIMKLYLPRLGFAPYLPPAEEAAIAALKRSFEALNTHLVHNTYLVGDSVTLADIITTANLYLGFSKLLVKSFTSEFPHVERYFWTLVNQPNFRKILGQVKQTEAMPPIQSAKKPAQPKESKPKTKEEPKKVAKSEPEKPKEEAEEEAPKPKPKNPLDLLPPSKMVLDDWKRLYSNTKTNFREVAVKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPKFVMDECYDMELYEWTKVDISDEAQKERASQMIEDAEPFEGEALLDAKCFK 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00023 383 Gene3D Glutaredoxin 1 42 - -
Trre4g00023 383 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 223 383 IPR001662 GO:0003746|GO:0006414
Trre4g00023 383 SFLD Main (cytGST) 5 154 - -
Trre4g00023 383 Pfam Glutathione S-transferase, C-terminal domain 92 161 IPR004046 -
Trre4g00023 383 Gene3D - 44 180 - -
Trre4g00023 383 FunFam Elongation factor 1-gamma 1 223 383 - -
Trre4g00023 383 SMART EF1G_2 222 330 IPR001662 GO:0003746|GO:0006414
Trre4g00023 383 SUPERFAMILY eEF1-gamma domain 223 383 IPR036433 GO:0003746|GO:0006414
Trre4g00023 383 SUPERFAMILY GST C-terminal domain-like 38 178 IPR036282 -
Trre4g00023 383 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 383 IPR044628 GO:0004364
Trre4g00023 383 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 223 383 IPR036433 GO:0003746|GO:0006414
Trre4g00023 383 Pfam Elongation factor 1 gamma, conserved domain 222 330 IPR001662 GO:0003746|GO:0006414
Trre4g00023 383 MobiDBLite consensus disorder prediction 174 231 - -
Trre4g00023 383 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 47 IPR004045 -
Trre4g00023 383 SUPERFAMILY Thioredoxin-like 5 41 IPR036249 -
Trre4g00023 383 CDD GST_C_EF1Bgamma_like 54 176 - -
Trre4g00023 383 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 51 179 IPR010987 -
Trre4g00023 383 MobiDBLite consensus disorder prediction 187 223 - -
Trre4g00023 383 SFLD Glutathione Transferase (cytosolic) 5 154 IPR040079 -
Trre4g00023 383 Pfam Glutathione S-transferase, N-terminal domain 5 41 IPR004045 -
Trre4g00023 383 FunFam Elongation factor 1 gamma 44 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00023 Trre-Chr4 188776 190767 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00023 1 383 Eukaryotic Initiation Factors Gene Family AT1G57720 76.042 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00023 K03233 - gmx:100787125 614.764