Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00018 ATGGGTTGTATATGCTCCAAAGGCGGCAAATCTACAAATGAATATGTTGCCCGAAACCACCCAACACAACTCAATCCAAACAAATCATCAAAGCATTTGGCTATCGATACTAATGATTCCACTACGCGCCTCATATCCAACACTTATCGCAATTCCTCCGATGAAGGAGACAAACAAAATGTTGTTGGAATAGGAGGAGGAGGAGGAGGAGGAGGATCACAAGTAGAAAAAGATGATGATGATGATGAAGAAGATAGCAAGAGGATAAGTAGATGTTTGAGTTATGGGGAAAGGGGATCGCTTATTGTTGTTGGTTGGCCTTCTTGGCTCACTTCTGTTGCCCCTGAAGCCATAGCTGGTTGGATACCTCGCAGACCTGACTCTTTTCACAAATTGGACAAGATTGGTCAAGGAACTTACAGCAGTGTTTACAGAGCTCGCGATCTTGAAACTAACAAAATCGTTGCTTTGAAGAAGGTTAAATTTGCTAATATGGATCCAGAAAGTGTTCGTTTTATGGCCAGAGAAATCATTCTCCTAAGAAGGCTTGATCATCCAAATGTCATGAAACTTGAAGGAATGATCACTTCAAAGCTTTCCGGTAGCTTGTACCTTGTTTTCGAATATATGGACCATGATCTTACTGGTCTTTCAACAATGCCTGGCAACAAGTTTACTCAACCACAGATCAAGTGTTATATGCAACAACTTCTTCGCGGTCTTGAGCATTGTCACAGTCGCGGTGTTATGCATCGGGACATCAAGGGCTCAAATCTTCTACTTGACAATAATGGCAATCTTAAGATTGCTGATTTTGGGCTTGCAACTCATTTTCAGCCATCTCGAGGGCAGCCTTTAACAAGTCGTGTAGTTACCTTGTGGTACCGGCCACCTGAACTTTTGCTTGGAGCTACAGATTATGGAGTTGCTGTGGATTTGTGGAGTGCTGGTTGTATTCTTGCAGAACTACTTACCGGGAAGCCTATAATGCCTGGACGAACTGAGGTGGAGCAACTACATAAAATCTTCAAGCTTTGTGGATCTCCTTCTGAAGAATACTGGAAGAAGTCAAAGCTACCACATGCGACAATTTTTAAACCTCAACAACCTTACAAACGTGTTGTTTCTGAGACATTCAAGGATTTTCCTTCATCGGCACTGAGCCTCTTGGAGGTCTTACTTGCTATTGAACCAAACCATCGAGGAACTGCATCTTCGGCACTTCAGAATGAGTTCTTCACATCAATGCCACTTCCTTGTGATCCATCAACTTTGCCAAAGTACCCACCGAGTAAGGAGTTTGGTGCCAGACTTCGAGAAGAGGAAGCTAGAAGACGACGAACAGCAAATAAAGGACATGGAAGACAGGAATCAGTTGGAAGGAATTTTAAAGAGTCTAAAGTTGTCCCAGCACCTGATGCTGATGTTATGCTTCAGGCATCAATAGAGAAGAGACAAGGGCAGTGTATTTCAAAATGCATTAGTGAGAAGTACAATCATGAAGAGGAAGGAGGTTGCTTGCCTCTTGAACCTGCAAAGTCAAGAGCACATAATATCTTCTCTCATTCGGGCCAGTCAATGCATCCAAGTGCACATGGATCGTCACGCAACATGAATTTGAAAGAGGAAGTTGTTCTTACTGGCCCTGATCGTGTGTTTACATCAAGAAACTCTGAATTGAGAAAACAAAATTCCTACTGGCACGGTAGGACTGTACAATTATCAAGATTTTCTAATTCACTTGCAGTTCGAGGTGATTCACGGCTTGATATGGGTGGGGACCGTGATTTGAATTCACAGTGGCTAGAGGATGACTTTGATATGAGATCTAGTCACTTGCCAGATTGTGAGTCCAATCGATTGCTGGATGGAACGAAACATTCACGCAAGAAAGACTTCCATCTACTCGGAAAGGATCGTGCCATGGGTCATGCTCCCAAAAATTGCCACATCAACTATTCTGGACCACTATTGCCTCCAGAGGATGATCTTGAAGAGATCCTTAAGGAGCATGAAAGACAAATCCAACAAGCTGTGCGCAAAGCTCGTCTAGCTAAGGAAAATAAAAAGGCTGACATTGAGAATGGCCAAACTGAGTCACTATTTCACCAAGTGAGAAGTGGCAAGTGA 2130 0.43 MGCICSKGGKSTNEYVARNHPTQLNPNKSSKHLAIDTNDSTTRLISNTYRNSSDEGDKQNVVGIGGGGGGGGSQVEKDDDDDEEDSKRISRCLSYGERGSLIVVGWPSWLTSVAPEAIAGWIPRRPDSFHKLDKIGQGTYSSVYRARDLETNKIVALKKVKFANMDPESVRFMAREIILLRRLDHPNVMKLEGMITSKLSGSLYLVFEYMDHDLTGLSTMPGNKFTQPQIKCYMQQLLRGLEHCHSRGVMHRDIKGSNLLLDNNGNLKIADFGLATHFQPSRGQPLTSRVVTLWYRPPELLLGATDYGVAVDLWSAGCILAELLTGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRVVSETFKDFPSSALSLLEVLLAIEPNHRGTASSALQNEFFTSMPLPCDPSTLPKYPPSKEFGARLREEEARRRRTANKGHGRQESVGRNFKESKVVPAPDADVMLQASIEKRQGQCISKCISEKYNHEEEGGCLPLEPAKSRAHNIFSHSGQSMHPSAHGSSRNMNLKEEVVLTGPDRVFTSRNSELRKQNSYWHGRTVQLSRFSNSLAVRGDSRLDMGGDRDLNSQWLEDDFDMRSSHLPDCESNRLLDGTKHSRKKDFHLLGKDRAMGHAPKNCHINYSGPLLPPEDDLEEILKEHERQIQQAVRKARLAKENKKADIENGQTESLFHQVRSGK 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00018 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Trre4g00018 709 SMART serkin_6 129 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00018 709 Coils Coil 661 688 - -
Trre4g00018 709 PANTHER CELL DIVISION PROTEIN KINASE 127 419 - -
Trre4g00018 709 ProSitePatterns Protein kinases ATP-binding region signature. 135 158 IPR017441 GO:0005524
Trre4g00018 709 FunFam probable serine/threonine-protein kinase At1g54610 116 211 - -
Trre4g00018 709 MobiDBLite consensus disorder prediction 439 461 - -
Trre4g00018 709 FunFam probable serine/threonine-protein kinase At1g54610 212 453 - -
Trre4g00018 709 Gene3D Transferase(Phosphotransferase) domain 1 212 453 - -
Trre4g00018 709 SUPERFAMILY Protein kinase-like (PK-like) 123 421 IPR011009 -
Trre4g00018 709 ProSiteProfiles Protein kinase domain profile. 129 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00018 709 Pfam Protein kinase domain 129 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00018 709 CDD STKc_CDK9_like 129 413 - -
Trre4g00018 709 MobiDBLite consensus disorder prediction 49 88 - -
Trre4g00018 709 Gene3D Phosphorylase Kinase; domain 1 116 211 - -
Trre4g00018 709 MobiDBLite consensus disorder prediction 20 39 - -
Trre4g00018 709 MobiDBLite consensus disorder prediction 685 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00018 Trre-Chr4 168973 173363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00018 121 451 Core Cell Cycle Gene Families AT5G10270 52.023 8.02e-117 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre4g00018 Pkinase 3.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00018 - - cam:101495256 1038.48