Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00015 ATGGAGTGGGTGGCGGAAACAGAGGAAAGAATTGAGATAGGCAGTGACAGTCATGACGATGATGATTACACAATGAATCAGAAACAACCGTTACTGTTGAGAAGAAGAATCAACAACTCTTCTCAACAGGCTATCGTTGGAGCCAATATATGTCCCATTCAAAGTCTTGATTACGAGTTAATTGAGAATGATCTGTTGAAGCAGGACTGGAGGTCAAGAACCAAGGTTGAGATATACCAATATGTTATTCTGAAATGGACCCTTGCACTTCTTATTGGTTTAATCACAGGATTTGTTGGATTTTTTAACAACCTTGGAGTTGAGAATATTGCTGGTTTTAAAACTTTACTCACCAACAATCTCATGCTTAAGCAAAAGTATCATGAGGCATTTGCATTGTACGTCGGTTGTAACATGATTTTAGGGGTTGCGGCTGCAGCCCTGTGTGCTTACATTGCCCCTGCAGCAGCAGGTTCCGGCATACCAGAGGTAAAGGCATACCTCAATGGCATTGATGCACATTCTATATTGGCTCCGTCTACCCTCTTTGTCAAGATATTTGGTTCAATTTTAGGAGTTGCTGCTGGTTTCATTGTGGGGAAAGAAGGACCCATGGTACATACAGGTGCTTGCATTGCTAATTTACTCGGACAAGGCGGTTCTCGTAAATATCGACTCACCTGGAAATGGCTCGGATACTTCAAAAATGATAGAGATCGAAGGGATTTGATCACTTGCGGTGCAGCTGCAGGTGTTGCCGCTGCCTTCCGTGCTCCTGTTGGTGGTGTTCTTTTCGCACTCGAAGAAGCTGCTTCGTGGTGGAGGAGTGCTCTTCTATGGCGTACATTCTTTACCACCGCTGTAGTAGCAGTTGTTTTGAGGAGTCTTATACAATTTTGTCATCAAGGAGAAGGCAAATGCGGTCTCTTTGGCCAAGGAGGACTCATAATGTTTGATGTTAATTCTGCAAAGCCTTCCTACACCACAGTCGATCTCCTCGCAGTTATATTTCTCGGAGTCATTGGAGGTCTTATGGGAAGCCTTTACAATTATCTTGTTGATAAAGTCCTTCGCACTTACACCACAATAAATGAGAGAGGTCCAATATTCAAGATTTTACTTGTGATGATTATCTCGTTTGTGACGTCTTGTATTCGATTTGTGCTTCCATTGCTATCAAAGTGTGTGCCATGTCCAGGGGAGTGCCCTAGCCCTCCAACCGCAAGTTTCTCAATACACTATGACAATTTTCAATGTCCACCCAACCACTACAATGATCTCAGCTCTCTCTTTTTCACTACCAACGATAATGCCATCCGCAACCTATTCAATGATAGCTCCGAATCTACCAACGCCGGATTTCAGCTTTTAACTCTCATAATTTTCTTCGTTGCAATATACCTGCTTGGAATTGTGACATACGGTGTTGCCATTCCCTCTGGTCTCTTCATTCCGGTCATACTTGCTGGAGCTTCCTATGGGCGTCTAATAGGGACTGTGTTGGCTCAATTCACAGTTCTTGATACTGGTTTGTTTGCTCTCCTTGGAGCAGCATCCTTCCTTGGTGGAACCATGAGAATGACGGTTTCTCTCTGTGTCATACTTCTTGAGCTCACGAATAACTTGTTGATGCTACCGTTGGTCATGTTGGTTCTCCTCATATCTAAGACAGTGGCAGATTGTTTTAACAAAGGTGTTTATGATCAAATTGTGGAGTTTAAGGGACTGCCTTATTTGGAAGCACATGCAGAGCCGTACATGAGGAATTTAGTTGCAGGCGACATTGTTTCTGGTCCACTGTTTTCTTTTTGTGGGATCGAGAAAGTGGGGAATATTGTTCATGCTTTGAAGGTGACAAGACATCATGGATTTCCTGTAATTGACGAGCCACCTTTGACGGCTTCTCCTGAGTTGTGTGGGTTGGTATTGAGGTCTCATCTGCTGGTACTTCTCAAGCACAGAACATTGTTCACTAGGGAGAGAGTGGTGACAGGATCTACCATTATGAACAAGGTTAAGGCAAGTGATTTTGCGAAACCGGGTTTGGGGAGAGGGATAAGGGTGGAGGATTTAGACATTTCACAAGAGGATATGGAAATGTTTGTTGATCTACATCCAATCACTAATACATCTCCATATACTGTTGTTGAAACAATGTCTCTTGCAAAAGCTGCTCTTCTTTTCAGGGAGCTTGGACTCAGGCATTTGCTCGTCGTGCCCAAGAAACCAGGAAGGCCTCCAATTGTTGGGATCCTGACAAGGCATGATTTCATGTCTGAATATATCTTGGGGCTATTCCCCAACTTGAATTCCCGCAAGTATAGCTACAACAATCAAGACAATCAACAATAA 2352 0.4337 MEWVAETEERIEIGSDSHDDDDYTMNQKQPLLLRRRINNSSQQAIVGANICPIQSLDYELIENDLLKQDWRSRTKVEIYQYVILKWTLALLIGLITGFVGFFNNLGVENIAGFKTLLTNNLMLKQKYHEAFALYVGCNMILGVAAAALCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSILGVAAGFIVGKEGPMVHTGACIANLLGQGGSRKYRLTWKWLGYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRSLIQFCHQGEGKCGLFGQGGLIMFDVNSAKPSYTTVDLLAVIFLGVIGGLMGSLYNYLVDKVLRTYTTINERGPIFKILLVMIISFVTSCIRFVLPLLSKCVPCPGECPSPPTASFSIHYDNFQCPPNHYNDLSSLFFTTNDNAIRNLFNDSSESTNAGFQLLTLIIFFVAIYLLGIVTYGVAIPSGLFIPVILAGASYGRLIGTVLAQFTVLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADCFNKGVYDQIVEFKGLPYLEAHAEPYMRNLVAGDIVSGPLFSFCGIEKVGNIVHALKVTRHHGFPVIDEPPLTASPELCGLVLRSHLLVLLKHRTLFTRERVVTGSTIMNKVKASDFAKPGLGRGIRVEDLDISQEDMEMFVDLHPITNTSPYTVVETMSLAKAALLFRELGLRHLLVVPKKPGRPPIVGILTRHDFMSEYILGLFPNLNSRKYSYNNQDNQQ 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00015 783 FunFam Chloride channel ClC3 77 395 - -
Trre4g00015 783 ProSiteProfiles CBS domain profile. 707 768 IPR000644 -
Trre4g00015 783 SMART cbs_1 711 762 IPR000644 -
Trre4g00015 783 SMART cbs_1 599 652 IPR000644 -
Trre4g00015 783 CDD ClC_6_like 54 579 - -
Trre4g00015 783 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 16 763 - -
Trre4g00015 783 Pfam Voltage gated chloride channel 142 560 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre4g00015 783 Gene3D Clc chloride channel 77 579 - -
Trre4g00015 783 Pfam CBS domain 709 759 IPR000644 -
Trre4g00015 783 CDD CBS_pair_voltage-gated_CLC_euk_bac 582 760 - -
Trre4g00015 783 Gene3D - 580 761 IPR046342 -
Trre4g00015 783 PRINTS Plant CLC chloride channel signature 284 294 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre4g00015 783 PRINTS Plant CLC chloride channel signature 427 443 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre4g00015 783 PRINTS Plant CLC chloride channel signature 59 67 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre4g00015 783 PRINTS Plant CLC chloride channel signature 270 278 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre4g00015 783 PRINTS Chloride channel signature 478 498 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre4g00015 783 PRINTS Chloride channel signature 566 580 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre4g00015 783 PRINTS Chloride channel signature 185 204 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre4g00015 783 PRINTS Chloride channel signature 510 526 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre4g00015 783 PRINTS Chloride channel signature 249 268 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre4g00015 783 PRINTS Chloride channel signature 154 171 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre4g00015 783 PRINTS Chloride channel signature 528 547 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre4g00015 783 SUPERFAMILY CBS-domain pair 583 760 IPR046342 -
Trre4g00015 783 SUPERFAMILY Clc chloride channel 63 582 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00015 Trre-Chr4 154971 159730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00015 21 773 Ion Channels AT5G49890 74.406 0.0 1106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00015 K05016 - jre:108988922 1093.95