Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00009 ATGGCTTCAAATCATTTGTCAGCCACAAGCCGTGCAGGGGCAACTAATGATGCTTTATACAAGGAATTATGGCATGCCTGTGCTGGACCCCTTGTCACTCTTCCCCGTGAAGGGGAGAGAGTTTATTACTTCCCTCAAGGTCACATGGAACAGCTCGAGGCATCTATGAATCAGGGATTAGAGCAGCAAATGCCTTCCTTTAATCTACCTTCTAAAATATTATGTAAAGTGGTCAATATTCATCTCCGGGCTGAACCTGAAACAGATGAAGTATATGCACAAATAACTTTGCTACCTGAAACCGATCAAAGTGAGGTGACAAGCCCAGACGATCCTCTGCCTGAACCTCCAAGGTGTACAGTTCATTCATTTTGCAAGACACTTACAGCTTCTGACACTAGCACTCATGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTACCACCACTGGACATGACTCAGCAGCCACCATGGCAAGAATTGGTTGCGACTGATTTGCACGGGAATGAATGGCATTTTCGACATATTTTTCGCGGGCAACCCAGGCGCCACTTACTAACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGACGCATTTATATTTTTAAGGGGTGAAAATGGAGAGCTTCGAGTTGGAGTCAGGAGGCTCATGAGACAGCAAAGCAATGTGCCATCTTCTGTTATATCTAGTCACAGCATGCATCTTGGTGTTTTGGCCACTGCATCTCATGCCATTTCCACCGGAACATTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTAAGTATTAACAAGTATCTTGAAGCTCGAAATCATAAACTTTCTGTTGGGATGCGATTCAAAATGAGGTTCGAGGGTGATGAAGTACCTGAAAGAAGGTTCAGTGGTACAATTGTGGGTGTTGAAGATAATAAATTGTCCGTTTGGGCTGATTCTGAGTGGCGATCACTAAAGGTTCAATGGGATGAACCGTCATCAATTCTGCGTCCAGATAAAGTTTCTCCATGGGAATTGGAGCCACTTGTATCTACCCCTCCTGCAAACGCCCAGCCAACCCAACGAAACAAGAGATCACGGCCTCCTGTTCTCCCGTCAACAACGCCTGATTCTTCTCTGCAAGGCATATGGAAATCACCAATTGAATCTCCACCTTTCCCTTATCGTGACCCTCAACATGGACGAGACCTCTATCCATCACCAAGATTCAGCTCTACTGCGACTAGCTTTCTTGGTTTTGGTGGGAACACCCCTGCTTCTAACAAGTCAATATATTGGTCAAGTAGATTGGAAAACTCTACCAAACCTTTTTTGCCTACAGCACTTAAAGAATCTGGGGAGAAGAGACAAGGCACTGGAAATGGCTGTAGGCTCTTTGGGATTCAGTTACTTGAGAATTCTAATGCAGAAGAAAGTCTGCAAACAATTCCTTTGTCAGGAAGGGTGGGTGATGATAGGTCTGTTCCGTCCTTGGATGCCGAGTCTGACCAACATTCTGAACCATCAAATGTTAATCGGTCTGATATTCCTTCAGTAAGCTGTGATGCTGACAAATCATGCCTGCGGTCTCCCCAGGAGTCACAAAGCAGACAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACACGTTTTGATGGATATGAGGATCTGCTTAGGAAATTGGAAGAGATGTTCGACATTGAGGGTGAACTCTGTGGGGCAACGAAAAAATGGCTGGTCGTTTACACTGACAATGAAGATGATAGGATGATGGTTGGGGATGATCCATGGCTTGAATTTTGTAGCGTTGTGAGGAAAATTTTCATCTACACACCAGATGAGGTGAAGAAGCTCTCGCCCAAAATAGGTCTTCCGACCAATGAAGAAGGTAAACCAAGCAAACTGGACTGCGAAGCAGTTGTCAATCCCGAGGACCAGTCATCTATTGTGGGGCCTGGTTGCTAA 2013 0.4506 MASNHLSATSRAGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNIHLRAEPETDEVYAQITLLPETDQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNVPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFIVSINKYLEARNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKLSVWADSEWRSLKVQWDEPSSILRPDKVSPWELEPLVSTPPANAQPTQRNKRSRPPVLPSTTPDSSLQGIWKSPIESPPFPYRDPQHGRDLYPSPRFSSTATSFLGFGGNTPASNKSIYWSSRLENSTKPFLPTALKESGEKRQGTGNGCRLFGIQLLENSNAEESLQTIPLSGRVGDDRSVPSLDAESDQHSEPSNVNRSDIPSVSCDADKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIEGELCGATKKWLVVYTDNEDDRMMVGDDPWLEFCSVVRKIFIYTPDEVKKLSPKIGLPTNEEGKPSKLDCEAVVNPEDQSSIVGPGC 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00009 670 Gene3D - 541 635 - -
Trre4g00009 670 Gene3D - 287 359 - -
Trre4g00009 670 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Trre4g00009 670 Pfam Auxin response factor 250 332 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre4g00009 670 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 635 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre4g00009 670 SMART B3_2 124 226 IPR003340 GO:0003677
Trre4g00009 670 FunFam Auxin response factor 541 635 - -
Trre4g00009 670 SUPERFAMILY DNA-binding pseudobarrel domain 113 253 IPR015300 -
Trre4g00009 670 MobiDBLite consensus disorder prediction 507 523 - -
Trre4g00009 670 SUPERFAMILY CAD & PB1 domains 548 623 - -
Trre4g00009 670 CDD B3_DNA 122 224 IPR003340 GO:0003677
Trre4g00009 670 FunFam Auxin response factor 122 226 - -
Trre4g00009 670 MobiDBLite consensus disorder prediction 488 523 - -
Trre4g00009 670 MobiDBLite consensus disorder prediction 353 404 - -
Trre4g00009 670 FunFam Auxin response factor 287 359 - -
Trre4g00009 670 Pfam B3 DNA binding domain 124 224 IPR003340 GO:0003677
Trre4g00009 670 MobiDBLite consensus disorder prediction 359 391 - -
Trre4g00009 670 ProSiteProfiles PB1 domain profile. 546 639 IPR000270 GO:0005515
Trre4g00009 670 Gene3D - 121 226 IPR015300 -
Trre4g00009 670 Pfam AUX/IAA family 543 636 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00009 Trre-Chr4 96497 103559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00009 1 664 B3 DNA Binding Superfamily AT1G59750 70.659 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre4g00009 AUX_IAA 3.5e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00009 K14486 - gmx:100793224 1215.29