Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04282 ATGCGCAGCACAACGCACCTCACCTTAAGTGCAAACATAGATTCTCTCCTCAAATTGAAAAACTCTCTTCAAAACACTGACGTTGTGTTATCTTCATGGAACACATCTGCCCCTCCATGTACAGGTGATGATGCAAATTGGTCCGGCGTTCTATGCTACAAAGGACATGTTTGGGGATTCAAACTCGAAAACATGAACCTTAAAGGCAACATTGACGTTGATTCCATCAAGGATTTGCCTTATATCAGAACCCTTAGCCTCATGAACAACCAATTTGATACCCCGTGGCCGGACCTCAACAAACTCTCTGGTCTCAAGACCCTCTACCTATCAAATAATAAATTTTCCGGTGAGATTCCGGCAGACGCGTTTCATGGGATGCAGTGGTTGAAGAAAATTCATCTGTCTAACAACCAGTTCACTGGTCCAATTCCAACTTCCCTTTCTTCCCTGCCGAGGCTGATATCGTTGAGGTTGGATGGAAACAGATTCAATGGTCCTATTCCTGAATTTCGCAAACCATTGAAATCATTCAGTGCAGCAAATAATCAATTAGAGGGTGAAATACCTGCATCCCTTAGCAACATTCCAGCTTCATCTTTTTCTGGTAATGAAAAGCTGTGTGGAGCCCCTTTAGGAGCATGCTTGCCGAAAAAGAAACCATTATCAATAAATGTGAGCCGTATAGTGGTCGTGGTTCTTGTTAGTCTTGCAATGTTTGTGATTGCAGCAGTAATATTATTTGTCCTTATTAGAAGAAGAAAAAAATCTACACAACAAGAATCAGGAGGAGGAGGTGGAGGAGGAGTTGGTGTAGTTGCCAACCCCTGCAGTAGGGATGGTACTTGTCAAAAGAAAGGATCTTCGTCATCACCTAATGATATTTCAGATGATCAAGGTTCAATAAGATCACGTGGAACCAGCACCGGTAGCAGAAGCATGAGGTTATCCTTTGTGAGGGAAGAAGTATCGGAACAATTTGATTTGCAAGATCTGTTGAGAGCCTCTGCCGAGATATTAGGAAGTGGTTGTTACAGTTCATCCTATAAGGCTGCTCTGTTGACTGGCCCCACCGTTGTCGTCAAAAGATTCAAACAGATGAACAATGTTGACAGGCAAGAGTTTCGAGAACACATGCGAAGACTAGGAAGGTTAAATCATCCTAATATCCTTCCTCTCCTGGCTTACTACTACAAAAGAGATGAGAAACTCTTCATTACTGACTTTGTTCGCAATGGCAGTTTGGCCATTCGCCTTCACGGATACCAAGCGATAGGACAGGAAAGCCTTGATTGGCCGACGAGGTTGAAGATTGTGAAAGGTGTAACAAAAGGCATTGAATATCTGTACAAAGAGATGCCGAATCTGATTGCGCCTCACGGTCATCTTAAATCCTCAAATGTTCTTCTGAGTGAGTCTTTGGAGCCTGTACTGACTGACTATGGATTAGTACCTGTAATAAACCAGGATATTGCTCCTGAAATAATGGTTATATACAAGTCACCTGAGTATTTGCAGCAAGGGAGGGTCACTAAGAAGACTGATGTGTGGAGTCTTGGGATACTCATTTTGGAAATTATAACCGGAAAGTTTCCTGCTAATTTTATACAAGGGAGTGAGTTGAGTTTGGCGAATTGGGTGGAATCTGTTGAACCGGAAGCGTGGAGTAGTGAGGTGTTTGATAAAGATATGGTGTTAACGAGTAACAGTGAGGGAGAGATGGTCAAGCTTTCGAAGATTGCATTGGCTTGTTGTGATATGGATGTCGATAAGAGACTGGATTTGAAGGAAGCAGTTTCGAGAATTCAAGAGGTACAAGAAGATACTATTAATGAGGATGATATGTATTCTTCTTCTTAA 1860 0.4226 MRSTTHLTLSANIDSLLKLKNSLQNTDVVLSSWNTSAPPCTGDDANWSGVLCYKGHVWGFKLENMNLKGNIDVDSIKDLPYIRTLSLMNNQFDTPWPDLNKLSGLKTLYLSNNKFSGEIPADAFHGMQWLKKIHLSNNQFTGPIPTSLSSLPRLISLRLDGNRFNGPIPEFRKPLKSFSAANNQLEGEIPASLSNIPASSFSGNEKLCGAPLGACLPKKKPLSINVSRIVVVVLVSLAMFVIAAVILFVLIRRRKKSTQQESGGGGGGGVGVVANPCSRDGTCQKKGSSSSPNDISDDQGSIRSRGTSTGSRSMRLSFVREEVSEQFDLQDLLRASAEILGSGCYSSSYKAALLTGPTVVVKRFKQMNNVDRQEFREHMRRLGRLNHPNILPLLAYYYKRDEKLFITDFVRNGSLAIRLHGYQAIGQESLDWPTRLKIVKGVTKGIEYLYKEMPNLIAPHGHLKSSNVLLSESLEPVLTDYGLVPVINQDIAPEIMVIYKSPEYLQQGRVTKKTDVWSLGILILEIITGKFPANFIQGSELSLANWVESVEPEAWSSEVFDKDMVLTSNSEGEMVKLSKIALACCDMDVDKRLDLKEAVSRIQEVQEDTINEDDMYSSS 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04282 619 Gene3D Ribonuclease Inhibitor 175 215 IPR032675 -
Trre3g04282 619 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 73 168 - -
Trre3g04282 619 Pfam Leucine rich repeat N-terminal domain 13 52 IPR013210 -
Trre3g04282 619 ProSiteProfiles Protein kinase domain profile. 334 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04282 619 SUPERFAMILY Protein kinase-like (PK-like) 338 605 IPR011009 -
Trre3g04282 619 Pfam Leucine rich repeat 104 164 IPR001611 GO:0005515
Trre3g04282 619 MobiDBLite consensus disorder prediction 281 310 - -
Trre3g04282 619 Gene3D Ribonuclease Inhibitor 10 173 IPR032675 -
Trre3g04282 619 Gene3D Transferase(Phosphotransferase) domain 1 410 618 - -
Trre3g04282 619 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 607 IPR046959 -
Trre3g04282 619 Gene3D Phosphorylase Kinase; domain 1 302 409 - -
Trre3g04282 619 SUPERFAMILY L domain-like 13 211 - -
Trre3g04282 619 Pfam Protein kinase domain 337 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04282 Trre-Chr3 54705457 54708278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04282 14 618 Receptor kinase-like Gene Family AT5G35390 49.919 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre3g04282 Pkinase 1.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04282 - - gmx:100785189 783.097