Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04255 ATGTCTTTGAGTGTTGCTAATGGTAGTGAATTTTCAAACATTTCTGAAATCAATTCTGATAAGGCAGCATGGGATGTTAAGGTTAAAATCATTAGGCTTTGGCAAGTTTCTGATTTTAATCGCAGTGCTTTACCCTTTTCTATTGAAATGGTTTTACTTGATGCAAATGGCGATAGAATTCATGCAACAGTCAAAAAAACTCTGATTTACAAGTTTAAGGACCAGATTTTGGAAGGGAAAATTTATGCTTTGCAAAATGTTGGTGTTTCAAATAATGGTGGTGCTTATTGTACTACTCGCCATCCTTATAAGATGAATTTTCTATTTAACACTTTTGTTCAAAGAATTTCTAATTTTGACATTTCAAAATCTCCATTTCACTTTGTTCCAATCTCTGAAATTGTTGGTGGATCTTATGACACTGATTATCTATGTGATGTAATGGGAGTATTGACTGGTGTTGGCCAAGAGCGTGAAGTCACAAATCAGAATGGAAGCACAACAAAGCTGAATGTCATTGCCTTGGAGGCAAATGGGAGCAAGATACAGTGCACATTATTTGGAAATTATGTTGATGAGCTGAATGCATTCCTTGGTGCTGGAGATTGTAACAATGCTGTTGTTATATTGCAGTTTGCAAAGGCTAAAAATTTTCAAGATAAAATCCACATTCAAAACTGCATGAACTGCAGTCTGTTGATTTTTAACTCCAGCTGTGCAGAAAGTGTTGCATTCAAGTCAAGCTTAGCTGAAAATGTTGATACTCCTTCTCCTCTTGCTTTAACCCAAATTGGATGTGAATCAAGGATTGAGCCCATTGATGAGTTTTTGCACAACACCCGTAGGATTACCTTGCAATGTCTTAGAGATGCTGGATCTGAAGGTTTTCATGTTGTAGCTGCTACAATCAAAAAGGTTTTAAACCCTGACAGTTTTTGGTACACAGCTTGTGTGTGCAATAAGGCTGTTATCCCAGACTCAAAAATGTTTTATTGTGAAAAGTGCAACAAGCATGTTGTGAGGGTGTTTCCTAGGTTTTGTATCAAGGTTAGAGTTATGGACAATACTGACTCTGCTATATTTGTCATTTTTGACAAAGATGCATCATCACTTTTTGATTTGTCTTGTGCTGATATGGTCCAAGCTTTGGAAAGTGGTGCAAGAGCTGGAGTTGTCACTGCTCTATTTGAAGCATTGGTTGATAAGACATGGCTTTTCAAGGTTGAATCAAAGGCAAATCATAAACAAAGGTTTGAGCAATCATTTAGGGTTAGAAAGCTTTGCACCGATGCTGCTATCATCCAACAATTTAAAGAGAAGTGGGACAATGAAGAAGCTGCTGTTGGGAAAAAAATATATGTAAGATAG 1368 0.3677 MSLSVANGSEFSNISEINSDKAAWDVKVKIIRLWQVSDFNRSALPFSIEMVLLDANGDRIHATVKKTLIYKFKDQILEGKIYALQNVGVSNNGGAYCTTRHPYKMNFLFNTFVQRISNFDISKSPFHFVPISEIVGGSYDTDYLCDVMGVLTGVGQEREVTNQNGSTTKLNVIALEANGSKIQCTLFGNYVDELNAFLGAGDCNNAVVILQFAKAKNFQDKIHIQNCMNCSLLIFNSSCAESVAFKSSLAENVDTPSPLALTQIGCESRIEPIDEFLHNTRRITLQCLRDAGSEGFHVVAATIKKVLNPDSFWYTACVCNKAVIPDSKMFYCEKCNKHVVRVFPRFCIKVRVMDNTDSAIFVIFDKDASSLFDLSCADMVQALESGARAGVVTALFEALVDKTWLFKVESKANHKQRFEQSFRVRKLCTDAAIIQQFKEKWDNEEAAVGKKIYVR 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04255 455 CDD RPA1_DBD_C 299 411 IPR047192 -
Trre3g04255 455 SUPERFAMILY Nucleic acid-binding proteins 126 252 IPR012340 -
Trre3g04255 455 Gene3D - 119 256 IPR012340 -
Trre3g04255 455 Pfam Replication factor-A C terminal domain 298 430 IPR013955 -
Trre3g04255 455 CDD RPA1_DBD_B_like 146 249 - -
Trre3g04255 455 SUPERFAMILY Nucleic acid-binding proteins 10 119 IPR012340 -
Trre3g04255 455 CDD RPA1_DBD_A_like 26 113 - -
Trre3g04255 455 Gene3D - 9 115 IPR012340 -
Trre3g04255 455 PANTHER OS03G0429900 PROTEIN 12 407 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre3g04255 455 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Trre3g04255 455 SUPERFAMILY Nucleic acid-binding proteins 292 429 IPR012340 -
Trre3g04255 455 Gene3D - 274 439 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04255 Trre-Chr3 54405259 54407271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04255 17 425 Core DNA Replication Machinery Family AT5G08020 23.721 6.35e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04255 - - tpra:123915358 636.336