Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04247 ATGGGCAGAAAGTGCTCACATTGTGGAAACATAGGACATAATTCAAGAACTTGTAATTCTTTAAGAGGAAATAGTAGTTTTGTTGGAGTTAGACTCTTTGGTGTTCAACTTGATTTATCATCTTCTTGTGTTTCCATGAAAAAGAGCTTTAGCATGGATTCTTTTCCTACTTCATCTTCTTCTCCTACTTCTTCCTTTTCTTCCTCAAGATTAACCATTGAGGAAAAAACCTCTATTGGTTATCTTTCAGATGGTCTTATAGTTCGAACACAAGAAAGGAAAAAAGGAGTTCCGTGGACAGAAGAGGAACACAGAAAATTTCTTGTTGGACTTGAGAAACTTGGAAAAGGAGATTGGAGAGGTATCTCTAGAAACTATGTGACTACAAGAACACCAACTCAAGTTGCAAGCCATGCTCAAAAGTACTTTATTCGACTTGCAACCTTGAATAAGAAGAAGAGACGTTCTAGCCTCTTTGATATGGTTGGTAGCGGCAACACAAACAGAACAGTTGATCATGAACAGTTCAAATGCAAATCAAGTGATTATAATAAGCAAATTATTGAAGATGGTGAGATTGAAGATGGTGAAGAATTAGCAGAACATGAAAATGTGCCTGATTGGTTACATCCTCTAACAAAGTCTTTAAATATGACATTGGTGATACCAAATTCTTCAAATGCAACAGCACCTGATCTTGAGTTAACTCTTGCGGTTCCTAAGTCTAATAAGACCATGGAACAAGATAAAACATCCAAGAGTTCATTTCTTATTGGGCCAATTAGTGTGACTTAA 795 0.3635 MGRKCSHCGNIGHNSRTCNSLRGNSSFVGVRLFGVQLDLSSSCVSMKKSFSMDSFPTSSSSPTSSFSSSRLTIEEKTSIGYLSDGLIVRTQERKKGVPWTEEEHRKFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLATLNKKKRRSSLFDMVGSGNTNRTVDHEQFKCKSSDYNKQIIEDGEIEDGEELAEHENVPDWLHPLTKSLNMTLVIPNSSNATAPDLELTLAVPKSNKTMEQDKTSKSSFLIGPISVT 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04247 264 ProSiteProfiles Myb-like domain profile. 91 143 IPR001005 -
Trre3g04247 264 FunFam transcription factor MYB1R1 97 148 - -
Trre3g04247 264 Pfam Myb-like DNA-binding domain 98 143 IPR001005 -
Trre3g04247 264 ProSiteProfiles SANT domain profile. 99 147 IPR017884 -
Trre3g04247 264 Gene3D - 97 149 - -
Trre3g04247 264 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Trre3g04247 264 CDD SANT 98 143 IPR001005 -
Trre3g04247 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 147 IPR017930 -
Trre3g04247 264 SUPERFAMILY Homeodomain-like 92 147 IPR009057 -
Trre3g04247 264 NCBIfam myb-like DNA-binding domain, SHAQKYF class 94 145 IPR006447 GO:0003677
Trre3g04247 264 PANTHER TRANSCRIPTION FACTOR KUA1 3 224 - -
Trre3g04247 264 SMART sant 95 145 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04247 Trre-Chr3 54351587 54353906 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre3g04247 Myb_DNA-binding 6.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04247 - - gmx:778053 271.937