Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04241 ATGTTGCTTCGAATTGACACAAATTGTTTAGTTCCACTTACACAAATACATCATGCGTTTCCTCACAAAATTGAACCGTCGAGAAACTGCGTCGTTCCAACATTGACATTGACAACAAGAAGTAGTTGTCGAGAGTGTCAATTTGTGATTCATTATCAGCAGCATGGGCAGCAGCGGCGGCATTGTCATTCGGGGACAGGGGAGACTGTCCCTGTCTCCGAATTGGAACTGCGGGAAGGTCGCATTGCAATTTCATCTTTTCTTCAACAAATGGGTGTATCAGTTGAGGAATCTGAATCAATCGCATCAAACTCTCCATCATATCTCAACATGTTAATTGAAGGTGTTAGGGATTTGGAGCAATTATCTTCATCTTCTTCTTTTTCTTCTATGAATGTGTTCAACTCGAACTTCAACTACAAAGATAAGATTCTTCACATTGCATCTCTCAAAGGTGACAAAGGAAAACTAGCTTACTTAGAGAGTCTTGGCTTCACACTCTCTTCCTCTATGAATGTTGCCAGATATATATCCTCTTCTTCATCTCACAACAACACTCTTCCATCACTCATAAACAAGGTTACTTCTATCAAACAACTCCTCTTTAATCATCATCATCATGATCATGATCATGATCATGATGATAACCATCAATTACTTATCAAGAATATTCGCCTTATCATGTGCCATTTATCAATTTCAATAGATGAAGATATGCAACACACTTTCTCATTTTTCGAAAAGGTTCAAGCAAAGCGTGGTGGTCTAAATATTCTTGCTTCTCAAGATGCTGCTTTCCGCTGCTTCATTGAATCATTTCCTCGTATACTTTTGTTATCACTAAATAATCACATCTCACCTATACTGGATTTTCTCCAAAATATCGGGATCCCAGCTGATCGTATTCCAAACATAATATTGGGTTTTCCTCCTATTCTGCTTTGGAATGTTCCACTCCTGAAAACTAGAGTTCGAGCCTTGAACCAGATTGATGGTGTGGATAAAGATTATGCCAAGTTGATGCTAAAATATCCATGGGTTCTATCTACAAGCATTCAAGAGAACTATAAGGAGGTCCTTTTCTTTTTCTATTCCGTGAAGGTTCCAAAGACATGGATAGACCATGCAATCAAAAGACAACCTCAACTATTGGGTTGTTCAACTAGCAAGCTGAAGTTGATGGTGGATCAGTTTGCCGAACTAGGAGTTCAAAAGAAAAAGTTGTATCGGGTTATCACTAGAAGTCCTCAGCTATTATTAAAGAAGCCCGAAGACTTTCAACAGGTTGTTATGTTCTTTGAAAATATCGGTTTAGATAAAGAAAATATTGGGAAAATACTTGCTCGCTGCCCTGAAATTTTTGCCAGCAGCATTAGTAAAACATTACAAAGGAAGATCGAGTTCCTTAGTAGAATTGGTGTTTCTAAAGCTTACATTCCTGTGGTTATCAGACAGCATCCAAAACTACTTGTGTCTGACATTGAGAAAACCTTACCTCAACGGATAGTGTACTTTATAAAGCTAGGACTTTCAGAGAAGGACATTGCATTTATGGTCACTAAATTTTCTCCTATACTTGGGTACAGCATAAAGGAAAAGGATGTTCTGAGACCAAAAATAGAATTTCTGGTGAACACAATGAAGAGGCCAGTAAAAGAAGTGGTCAACTACCCTAGGTATTTTAGCTATTCACTAGAAAAGAAGATAAAACCAAGATATTGGGTTCTGAAAGGAAGGAATATCGAATGTAGCTTAAAGGATATGCTGGGGAAAAATGATGAAGAATTTGCTGCTAAATTTATGGGTGTTGGAAGCAATTCAGCTCATGACAGGCTGTAA 1839 0.3801 MLLRIDTNCLVPLTQIHHAFPHKIEPSRNCVVPTLTLTTRSSCRECQFVIHYQQHGQQRRHCHSGTGETVPVSELELREGRIAISSFLQQMGVSVEESESIASNSPSYLNMLIEGVRDLEQLSSSSSFSSMNVFNSNFNYKDKILHIASLKGDKGKLAYLESLGFTLSSSMNVARYISSSSSHNNTLPSLINKVTSIKQLLFNHHHHDHDHDHDDNHQLLIKNIRLIMCHLSISIDEDMQHTFSFFEKVQAKRGGLNILASQDAAFRCFIESFPRILLLSLNNHISPILDFLQNIGIPADRIPNIILGFPPILLWNVPLLKTRVRALNQIDGVDKDYAKLMLKYPWVLSTSIQENYKEVLFFFYSVKVPKTWIDHAIKRQPQLLGCSTSKLKLMVDQFAELGVQKKKLYRVITRSPQLLLKKPEDFQQVVMFFENIGLDKENIGKILARCPEIFASSISKTLQRKIEFLSRIGVSKAYIPVVIRQHPKLLVSDIEKTLPQRIVYFIKLGLSEKDIAFMVTKFSPILGYSIKEKDVLRPKIEFLVNTMKRPVKEVVNYPRYFSYSLEKKIKPRYWVLKGRNIECSLKDMLGKNDEEFAAKFMGVGSNSAHDRL 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04241 612 FunFam Mitochondrial transcription termination factor family protein 389 604 - -
Trre3g04241 612 PANTHER CGI-12 PROTEIN-RELATED 157 395 IPR003690 GO:0003690|GO:0006355
Trre3g04241 612 Pfam mTERF 289 597 IPR003690 GO:0003690|GO:0006355
Trre3g04241 612 SMART mt_12 516 550 IPR003690 GO:0003690|GO:0006355
Trre3g04241 612 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Trre3g04241 612 SMART mt_12 551 582 IPR003690 GO:0003690|GO:0006355
Trre3g04241 612 SMART mt_12 409 439 IPR003690 GO:0003690|GO:0006355
Trre3g04241 612 SMART mt_12 338 369 IPR003690 GO:0003690|GO:0006355
Trre3g04241 612 SMART mt_12 444 475 IPR003690 GO:0003690|GO:0006355
Trre3g04241 612 SMART mt_12 374 404 IPR003690 GO:0003690|GO:0006355
Trre3g04241 612 SMART mt_12 480 511 IPR003690 GO:0003690|GO:0006355
Trre3g04241 612 Gene3D Transcription termination factor 3, mitochondrial 393 606 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04241 Trre-Chr3 54294374 54302080 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g04241 mTERF 1.2e-92 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04241 K15032 - gmx:100802127 691.419