Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04220 ATGGTCAATTCAATTGGATTCATTTTGTTTCTGGTTTTCTGTTTTGGTGTTAAAGTTTTTGTTCATGCACAACAACAAATAGGCTTCATAAGCATTGACTGTGGTGCTCCAACGATCGAGTACACCGACGATGTAACAGGAATAAAATACAGCTCAGAAGGATCATACATACAAACAGGAATTAAAGGAAACATTTCTTCTAAATATGCATATCCAAACAATCCAAATCTACCATATGTACTCTCAGATTTAAGAAGTTTTCCTGACGGAAACCGAAACTGTTACCGATTAATCGCTGGAAGAAAAAACAGTTTACATTTAATAAGAGCTTCTTTCTTATATGGAAACTATGACGGCGAAAACAAACTACCTGAATTTGATCTCTATGTTGGTGTAAATTTTTGGTCATCAGTGAAATTTAAGAATGCTTCAGAAGAACTTACATTGGAAACAATCAACATGGCAGAATCAGATGAAACAAATGTTTGTCTTGTGAATAAAGGAAATGGAATTCCTTTTATCTCATCATTAGAACTTAGACCAATTAATAGTTCTATTTATAAAACTGAGTTTGATGATTTTGCTTCACTTTTACTTTTCAAAAGATTTGATATTGGTTCAATTAATGGAAGTGGTAGATATGAAGATGATGTTTATGATAGAATTTGGTTTCCTTTGAATTCTTCTTCATGGAAATCTATAAGCACTTCTTCACCAATTAATGTTAATGGTGATGGATATAAAGCACCATTTGAAGTTATTAGTAATGCCGCTACGCCAAGAAATGAGAATGATAGTTTAGAGTTTTCTTGGATTTCTGATGAACCAAATTCGAAATTTTATGTCTATTTGTATTTTGCTGAAGTGGAAAAACTTGAGAAAAATCAGCTGAGAAAATTTAATGTTTCTTGGAATGGAACTCCTTTGATTGAATCTTTTGTACCAAGATACTTGCATGCAACTACTGTTATTAATTCTAAGTCGTTAGTCGCAGACGAACATCGAATTTCAATACATAGAACCGAAGATTCTACGCTTCCGCCTATTCTTAATGCAGTGGAGATTTATGTAGTAAGACAACACGATGCGGTTCCAACATTTGAAGAAGATGTTGAAGCTATAAGTGATGTAAAAGAAAGTTATAGAGTTCAAAGAAATTGGGTTGGTGATCCATGTGAACCAAAAAACTACACTTGGGAGGGCTTAAAATGCAACTACAGCACCTCACTTCCTCCAAGAATTATATCATTGAATCTGAGCAGAAGCAGTTTGAGTGGAATAATAATTCCTGCCATTTCCAATTTGACTTTCTTGGAATCATTGGATTTATTTGACAATAGCTTAACTGGATCAATGCCTCAATTTTTGGAAGAATTGAAGTCCCTTAAATATTTGGATTTAAGAGGCAACCAACTTTCAGGTTTTATCTCTACCACTCTCCTAGAAAGATCAAAGAATAGATTACTTACTTTGAGGGTGGATGATAAAAATCTCTCTGGTTCAAGTAAGAAAAAGAAGGTAATTGCTCCCATTGTTGCACCAATAGTATCAGTTTTAGTTCTATTGATCATTGCCATTCTCTATTGGAAGCTTAGAAGAAGAAATGAAACATCAGAGGAGGAGATGAATATGATCAACAAAGGATCAAATACTGTAGTGTCAAAGAAGTTGCAATACACTTATGCTGAGGTGATGGAAATCACTAGCAACTTTGAATTGGTCATTGGTAGGGGAGGATTTGGAAGTGTGTATTGTGGTCAAATGAAAGATGGCAATAAAGTTGCAGTCAAAATGCTTTCTTCATCTTCAACTCAAGGTCCAAAGGAATTTCGAACCGAGGCTGAACTATTGATGACAGTTCATCACAAAAATTTGGTATCCTTTATCGGCTATTGCGATGAAGGTGACAAGATGGCACTCATATATGAGCACATGGCTAATGGCAACCTAAAAAAATGTCTCTTAGAAAATCATTCACATTGCTTGAGTTGGGAAAGGAGGCTTCAAATAGCAATTGATGCTGCAGAAGGATTGGATTACCTACACCATGGATGCAAGCCACCTATAATACATAGAGATGTAAAATCAGCAAATATTCTTCTAAGTGAAGACTTAGAAGCTAAGATAGCAGATTTTGGACTTTCTAAGGTGTTTAAGAATAGTGATAATCTAAATGCAGAATCTACAATGATTCTTGTTGATGATGGTAATGAAAAATCTGCAATCATGGGAACAATGGGATACCTTGATCCAGAGTACTACAAATTAAATAACTTGAATGAAAAAAGTGACATATATAGCTATGGAGTTGTCCTATTGGAATTAATCACAGGTCTCCCTGCAGTGATTAAAGGAAAACCATCAATACACATACTTGAGTTTGTAAGACCATTACTTGCAAAAGGTGAATTAAATACAATTATAGATCCAAGACTCAAAGGAAAATTTGATGAAAATTCAGGATGGAAAGTTTTAGGATTAGCAATTTCATGCACTGCATCAACCTCAATTCAAAGACCAACAATGAGTGTTGTGTTAGCTGAATTGAAACAATGTGTTAATTTGGAGTCTACTAGTGAAAGGGAAATATTTGTGCCACCAAGACATATCTATAGTGAATTTTATAGTTCATCTGATGCATTTAAATCCATAGATAGTGAATCTATGACATATCCTATCCCAAGGTAA 2688 0.3434 MVNSIGFILFLVFCFGVKVFVHAQQQIGFISIDCGAPTIEYTDDVTGIKYSSEGSYIQTGIKGNISSKYAYPNNPNLPYVLSDLRSFPDGNRNCYRLIAGRKNSLHLIRASFLYGNYDGENKLPEFDLYVGVNFWSSVKFKNASEELTLETINMAESDETNVCLVNKGNGIPFISSLELRPINSSIYKTEFDDFASLLLFKRFDIGSINGSGRYEDDVYDRIWFPLNSSSWKSISTSSPINVNGDGYKAPFEVISNAATPRNENDSLEFSWISDEPNSKFYVYLYFAEVEKLEKNQLRKFNVSWNGTPLIESFVPRYLHATTVINSKSLVADEHRISIHRTEDSTLPPILNAVEIYVVRQHDAVPTFEEDVEAISDVKESYRVQRNWVGDPCEPKNYTWEGLKCNYSTSLPPRIISLNLSRSSLSGIIIPAISNLTFLESLDLFDNSLTGSMPQFLEELKSLKYLDLRGNQLSGFISTTLLERSKNRLLTLRVDDKNLSGSSKKKKVIAPIVAPIVSVLVLLIIAILYWKLRRRNETSEEEMNMINKGSNTVVSKKLQYTYAEVMEITSNFELVIGRGGFGSVYCGQMKDGNKVAVKMLSSSSTQGPKEFRTEAELLMTVHHKNLVSFIGYCDEGDKMALIYEHMANGNLKKCLLENHSHCLSWERRLQIAIDAAEGLDYLHHGCKPPIIHRDVKSANILLSEDLEAKIADFGLSKVFKNSDNLNAESTMILVDDGNEKSAIMGTMGYLDPEYYKLNNLNEKSDIYSYGVVLLELITGLPAVIKGKPSIHILEFVRPLLAKGELNTIIDPRLKGKFDENSGWKVLGLAISCTASTSIQRPTMSVVLAELKQCVNLESTSEREIFVPPRHIYSEFYSSSDAFKSIDSESMTYPIPR 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04220 895 CDD STKc_IRAK 575 851 - -
Trre3g04220 895 Gene3D - 204 359 - -
Trre3g04220 895 Gene3D Ribonuclease Inhibitor 366 506 IPR032675 -
Trre3g04220 895 SMART serkin_6 569 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04220 895 SUPERFAMILY L domain-like 384 500 - -
Trre3g04220 895 FunFam Os07g0541700 protein 645 733 - -
Trre3g04220 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 689 701 IPR008271 GO:0004672|GO:0006468
Trre3g04220 895 ProSitePatterns Protein kinases ATP-binding region signature. 575 597 IPR017441 GO:0005524
Trre3g04220 895 ProSiteProfiles Protein kinase domain profile. 569 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04220 895 FunFam Leucine-rich repeat receptor-like kinase 369 501 - -
Trre3g04220 895 Gene3D Phosphorylase Kinase; domain 1 575 645 - -
Trre3g04220 895 Pfam Leucine rich repeat 416 472 IPR001611 GO:0005515
Trre3g04220 895 PANTHER OS07G0107800 PROTEIN-RELATED 30 853 - -
Trre3g04220 895 Pfam Malectin-like domain 32 357 IPR024788 -
Trre3g04220 895 Pfam Protein tyrosine and serine/threonine kinase 573 843 IPR001245 GO:0004672|GO:0006468
Trre3g04220 895 Gene3D Transferase(Phosphotransferase) domain 1 646 865 - -
Trre3g04220 895 SUPERFAMILY Protein kinase-like (PK-like) 553 849 IPR011009 -
Trre3g04220 895 FunFam Leucine-rich repeat receptor-like protein kinase 546 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04220 Trre-Chr3 54089671 54095908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04220 2 880 Receptor kinase-like Gene Family AT4G29180 47.608 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre3g04220 Malectin_like 2.7e-103 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04220 - - gmx:100793137 1264.21