Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04219 ATGGGAAGGTCTCCATGTTGTGACAAATCAAAAGTGAAAAGAGGGTCATGGTCTCATGAAGAAGATGTTATCCTCAAAAACTACCTTAACAAACATGGCATAGCTGGTAATTGGATAACTCTCCCTCAAAAAGCAGGCTTAAATCGTTGTGGGAAGAGTTGTCGTCTAAGATGGTTAAACTATCTTAGGCCTCATATCAAGCTTGGAGGTTTCACTGAGGAGGAAGACAACATTATCTTCACTCTTTATAGCACCATAGGAAGCAGGTGGTCCTTAATAGCAGCTCAACTACCAGGAAGAACAGATAATGATGTGAAGAATCATTGGAACACTAAACTAAAGAAAAGGTTTTTGGCACAAAACTCATCCACAAGCAACAATATTTACACTTTCAGCAACACTACTAGTACTGCTACTACAAGTTCTGACCATTTTTCAAGTACTTTGACTTTTCAACCTCATCATGTTGAACAAACCTTTGTCTTTGATCAAAAACAGAAAACAACTTGTTTTGACTCATACAATGTTCTTGATTTGGATCAAACAACAATTAATAATATTCATTTTCCAATGAAAATGGAATCAGAAGCTTTTTATACTGGAAATAGCTTAAGTAGTAGCTGTAGTACTACACCAACCACCAAGGAAATTTCAAGTTTTTCAAGTGCACCTTTCTTAGAAGAACAACAAAACAATCATAATCAATGGTTTGGATATGACCATGATGATGAAATTCTACATGAATTTGTTATTGATGATTTTTTGAATCATGGACCATCATCTGGCTAA 789 0.3549 MGRSPCCDKSKVKRGSWSHEEDVILKNYLNKHGIAGNWITLPQKAGLNRCGKSCRLRWLNYLRPHIKLGGFTEEEDNIIFTLYSTIGSRWSLIAAQLPGRTDNDVKNHWNTKLKKRFLAQNSSTSNNIYTFSNTTSTATTSSDHFSSTLTFQPHHVEQTFVFDQKQKTTCFDSYNVLDLDQTTINNIHFPMKMESEAFYTGNSLSSSCSTTPTTKEISSFSSAPFLEEQQNNHNQWFGYDHDDEILHEFVIDDFLNHGPSSG 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04219 262 Gene3D - 6 68 - -
Trre3g04219 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Trre3g04219 262 CDD SANT 71 113 IPR001005 -
Trre3g04219 262 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Trre3g04219 262 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre3g04219 262 SMART sant 13 64 IPR001005 -
Trre3g04219 262 SMART sant 67 115 IPR001005 -
Trre3g04219 262 FunFam Transcription factor RAX3 7 68 - -
Trre3g04219 262 CDD SANT 16 62 IPR001005 -
Trre3g04219 262 Gene3D - 70 141 - -
Trre3g04219 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Trre3g04219 262 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Trre3g04219 262 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Trre3g04219 262 PANTHER OS09G0431300 PROTEIN 1 237 - -
Trre3g04219 262 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04219 Trre-Chr3 54084310 54086544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04219 1 120 MYB Transcription Factor Family AT5G57620 74.167 8.30e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre3g04219 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04219 K09422 - gmx:778160 291.967