Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04210 ATGATGATCGGAGAACACCATCAATCAAATCCAACGGTGCATATTCCTCCATGGCCAAATCACGATGATCCTATGGCTGAAATCTACTCCTCTTATTTCCCTGACGATAGCAATGCCGGCGATTACTCTCCGTACTATCTCCGTGAAGCAATGGCGGCGCTGCAGCGTTATCTTCCATCAAACGAGTTCGATGCTGTCGACGGCGATTCTGATTCAGAATCTCCGGCTGATTCTCCGGTGGATGCTTTTACATGCGATCATTTTCGTATGTACGAGTTCAAGATAAGAAGATGCGCACGTGGAAGATCACATGACTGGACGGAGTGTCCGTACGCACATCCCGGAGAAAAAGCACGCCGTCGTGATCCGAGAAAGTTTCATTACTCCGGTACGGCGTGTCCTGATTTTCGTAAAGGTAACTGTAAAAAAGGTGACGCGTGTGAATACGCGCATGGTGTTTTCGAGTGTTGGCTTCATCCAGCTCGTTACCGTACTCAGCCATGCAAAGACGGTACTAGCTGTCGCCGCCGTGTTTGTTTCTTCGCTCACACACCGGAACAGATTCGTCTCAATGTTAACAGTCCACCATCACGTAGCCTCAACTCACCGGATTCTTATGACGGTTCTCCTTTACGTCAAATGGCGTTACCCTTATCATTCATGTCTTCTCCTGTTTCGACTACTCCACCGGAGTCACCGTCGCCACCGATGTCTCCGATGACTCAGTCGCGGAGTAAATCTCTCGGCTCGAGTTCCATCAACGAGATGGTGGCTTCTTTACATAATCTGCAGCTTGGTAAATTGAAGTCTATTCCTTCTATGCCAGTTAATAGAAACATTTCACTCGGGTCAGGTTTCGGGTCACCTAGAGGTTCTGTGCTTCGACCCGGTTTTTGTAGTCTTCCAACAACGCCAACCCAAGTTTCTGGACCGGGTTCGGGTCGGGTTGGATATTTTGATCTTTGGGATCAGAGTTGTGAGGAGGAACCTATGATGGAGAGAGTTGAATCTGGGAGAGATATTAGGGCTAAGATGTTTGAGAAATTAAGCAAAGAAAATTCATTGAAAAATTCGGATTCGGTTCAACCCGATGGAGCTCCAGATGTTGGATGGATATCTGATTTGGTGAATTGA 1134 0.4744 MMIGEHHQSNPTVHIPPWPNHDDPMAEIYSSYFPDDSNAGDYSPYYLREAMAALQRYLPSNEFDAVDGDSDSESPADSPVDAFTCDHFRMYEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQIRLNVNSPPSRSLNSPDSYDGSPLRQMALPLSFMSSPVSTTPPESPSPPMSPMTQSRSKSLGSSSINEMVASLHNLQLGKLKSIPSMPVNRNISLGSGFGSPRGSVLRPGFCSLPTTPTQVSGPGSGRVGYFDLWDQSCEEEPMMERVESGRDIRAKMFEKLSKENSLKNSDSVQPDGAPDVGWISDLVN 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04210 377 MobiDBLite consensus disorder prediction 221 250 - -
Trre3g04210 377 Gene3D - 127 190 - -
Trre3g04210 377 ProSiteProfiles Zinc finger C3H1-type profile. 128 154 IPR000571 GO:0046872
Trre3g04210 377 MobiDBLite consensus disorder prediction 352 377 - -
Trre3g04210 377 FunFam Zinc finger CCCH domain-containing protein 66 85 153 - -
Trre3g04210 377 PANTHER UNKEMPT FAMILY MEMBER 50 376 IPR045234 -
Trre3g04210 377 SMART c3hfinal6 162 185 IPR000571 GO:0046872
Trre3g04210 377 SMART c3hfinal6 127 153 IPR000571 GO:0046872
Trre3g04210 377 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 152 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04210 Trre-Chr3 53944912 53946045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04210 83 234 C2H2 Transcription Factor Family AT5G12850 58.491 4.16e-57 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre3g04210 zf-CCCH 1.4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04210 - - aprc:113867365 588.571