Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04205 ATGGATAGTGCTTTTGATATGGTTGGTACCGTTTGTCCTGGGAGAGAGTCATGGCGCTTCAAGGTCCGTGTGCTTCGTGTATGGAATTTGTATTCTTTTTTGAAACCTGATACTGTCAATTCGCTTGAGATGGTTCTAATTGATGAGAAGGGTGCGAAAATTCATGCTTCCGTTCGCCAGCAGTTGCTGTATTTGTTCCGTGATAAAATCTCTGAGGGAAAAGTTTATATGATGTCACATTTCATGGTTGCACCAGAATCCGGTTTGTATCGAACCACTGATCATCCTTATAAGCTTATATTTGAGATGAAAACAAAAGTTCAAGTGTCTGAGAGTAAAAAAATAAATGAATATGGGCTGTCATTGACTACAATTGGTGGTGTTTGTAGTTATGGACCTGGTCATGATTTCTTAGTTGATGTTGTTGCTTTGGTTACTTCCATTTCTCCTGAGAAGGAATATATGCATGATGGAAAGGTTACTAAATTGATTGTCCTTCAGCTTATTGATAACAGTGGTAATTGTGAATGTGCTTTATTTGGATCTTATGTTGATGAACTTCAACGCTTGCTTGCAAATGCTGATGGTAGTTTGCCTGTTCTTCTGATTCAGTTTGCTAAAATTAAGAGTTTTCGTGGGAATGTTTCTATTCAAAATGTTTTGAATGCTACTAGGATTTATATTAATCCTTCAATGCCAGAGGCTGTTGCTTTCAAGGAAGGGCTTGCTATTGTTGGTATTGTTCTTTCTACTGCGCTACCCACTATTAGTACAAATTCTAAGCCAACTCTTGAGGAAGACTTTTTGTTGAAATATCCAAAAACTTCCATATCTGATTTGGTTGAAATCAACAAAGATGGTATCTATATTGTTGGTGGTATTGTTAATGAGTTAGTGGATCCTGAAGATTGGTGGTATGCTGCATGTAGTTGTCATAGGAGTGTCTCTGCTGATTCTGGTGCACACTATTGCCATCATTGTGTCAAACATGTTTTTAAAATGGTTCCAAGGTTTAGGGTGAAAGTAAGAGTTGCTGATGGATCTGGCCAAGCTGTATTTGTTGTGTTTGATGGAGATATGAATGCTCTACTGGGGAAACATTGCCATGAGTTGGTTTCTGTACCTAAGTCACAGAATGCTGGTTATTATCCTCCAGAACTGAATTTGTTGAAAGGGATGAAATTGTTGTTGAAGGTTGAAAAAAGTCCTAGGATTGGTTCTATATTGTTTGATGGGTCATTTAGAGTGAAGAGGATATGCACTGATATGTCTATTATTGATGCTTTTGATTCGGATTTTCTAAATGAGAATTCTGATTCTGATGATGGTGATGAGGATAATGTTGAAAGTGAGGATGAAGAAGCCGTTGACACTACTCAGATTGAAGATTTTGGTGGCCATGCTGTTGTTTCACCTTCTTCTGTCATAGTCTTAGCAGATAATGATGTTTCAAGTGATCTTATAACACCCTCCCCTATCAATTTGGCCGATAATTCTGACAAGGATTTAGAAGTTTTCACTTCTGGACTTGGTAATTGGAACGGTGATAAAATTTCATCTGCCAAGCGTAATCTACTTGCTGCCTTTACTGAATCTGTTGATGCTGGAGCAGTCTCTAACAAGATCACCAAGAAGGGAATTGAATTTGATGATGCTGGGTCAGTTTCAAACAAGGCCACCAACCAGTTTGCTGAATTTGATGATGCTGGATTAGTTCCTCCCAATGATGTTGCCAAGCACTCCAAGGGCTGA 1752 0.3847 MDSAFDMVGTVCPGRESWRFKVRVLRVWNLYSFLKPDTVNSLEMVLIDEKGAKIHASVRQQLLYLFRDKISEGKVYMMSHFMVAPESGLYRTTDHPYKLIFEMKTKVQVSESKKINEYGLSLTTIGGVCSYGPGHDFLVDVVALVTSISPEKEYMHDGKVTKLIVLQLIDNSGNCECALFGSYVDELQRLLANADGSLPVLLIQFAKIKSFRGNVSIQNVLNATRIYINPSMPEAVAFKEGLAIVGIVLSTALPTISTNSKPTLEEDFLLKYPKTSISDLVEINKDGIYIVGGIVNELVDPEDWWYAACSCHRSVSADSGAHYCHHCVKHVFKMVPRFRVKVRVADGSGQAVFVVFDGDMNALLGKHCHELVSVPKSQNAGYYPPELNLLKGMKLLLKVEKSPRIGSILFDGSFRVKRICTDMSIIDAFDSDFLNENSDSDDGDEDNVESEDEEAVDTTQIEDFGGHAVVSPSSVIVLADNDVSSDLITPSPINLADNSDKDLEVFTSGLGNWNGDKISSAKRNLLAAFTESVDAGAVSNKITKKGIEFDDAGSVSNKATNQFAEFDDAGLVPPNDVAKHSKG 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04205 583 CDD RPA1_DBD_B_like 140 239 - -
Trre3g04205 583 SUPERFAMILY Nucleic acid-binding proteins 121 245 IPR012340 -
Trre3g04205 583 MobiDBLite consensus disorder prediction 436 463 - -
Trre3g04205 583 SUPERFAMILY Nucleic acid-binding proteins 277 399 IPR012340 -
Trre3g04205 583 Gene3D - 7 109 IPR012340 -
Trre3g04205 583 CDD RPA1_DBD_A_like 21 107 - -
Trre3g04205 583 SUPERFAMILY Nucleic acid-binding proteins 7 111 IPR012340 -
Trre3g04205 583 Gene3D - 270 426 IPR012340 -
Trre3g04205 583 MobiDBLite consensus disorder prediction 436 459 - -
Trre3g04205 583 Gene3D - 114 244 IPR012340 -
Trre3g04205 583 PANTHER OS03G0429900 PROTEIN 10 400 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre3g04205 583 Pfam Domain of unknown function DUF223 43 116 IPR003871 -
Trre3g04205 583 Pfam Replication factor-A C terminal domain 298 379 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04205 Trre-Chr3 53855257 53857851 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04205 13 365 Core DNA Replication Machinery Family AT5G08020 23.784 2.55e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04205 - - tpra:123893724 608.986