Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04204 ATGAACAGGAACTTCATTCTTCTCGGTTTCTATTCTTCATCAATGGCTTCTATTTCAAGAAGATTACCAACACCTCAGGAAAGAGAAAAATGGAAGCACATTTTTGACACTGTCATAGATCCAAATCTGGCAACAATTGAAATCCCTGAAGCTTTTTTCCAAAAAATGAAACATGAGTTTGTAAAACACTCATTTGGTTGGATTAGGGGTCCAAAATATACGAAAATGTTGGTTAGGTATCTGCAATCTAATAGTGGTATGAAACTGTCTTCTGGAGGTTGTGTTTCTCATTATTTTGGAATTGTCATACGAACAAGAGTGACACTTAGCTATGTGATTGAAGAGAATACCTTTTGGATGAGAATTTTACCTCCAATTCAATCTGTGAAAAATGAATTTCCAGCAGAGGTAGTCCTAATTGATTCAGATGATGATGAAGGTGTAGATCAGAACACGAATGCTATTGCTGGAACTATGAACAAAAAAAACAAAGCAACACCTAACAAAACAAAAATTTGCAAGGCTACTTTGAAAAGGAAACGTCAAAAGGAGATAATAGTTGATGATGATGATCAAGATGAGCGTAATTTGAAGAGTTGCAGAAGTGCTAAAGTCAGGAAACAAGCTGTGCATTTGAAGTCTACCCGTGCATGTGAGAAACAGAAAAATATGAACTCTAGGTCAAAGGGATTGATCAAACAACGGCAACCAAATTCGAAATTTCGTGTATCCCATAAACAAAATGGTTTGAAGTCTACTCCTAAGAAATCAAACAAACAGCAGGAGTATAAGTATTCAAGGAAGCCAATCATTTTGAAACTAGAATCTGATGGAAGTTATGTTTGGGAGAAAATAATAAGTAGAGCTGTTGCATCCAGTTCAAAAGCTCAAGTGATGCATTTTCCCAAGGAAGTTTGTAGATTGGCTATGGGAAAACTACAATCCAAAATGTTGGTTCAAACCGAAGCAGGGGATTCATTCTATTGCCAGATTATAACAGCAGAAAGGAATGAATTTGAAAGATTCATATCAAAAGAGTGGTCTAAATTTGTGAAAAGAAATAACTTCCAAGCTGGAGACAAGTTGATTTTCAATCTTCAAAACCCACCTACCAAACTCCTCATTCAGATCATTCGCTGCAGTTCCTATAACTAA 1155 0.3593 MNRNFILLGFYSSSMASISRRLPTPQEREKWKHIFDTVIDPNLATIEIPEAFFQKMKHEFVKHSFGWIRGPKYTKMLVRYLQSNSGMKLSSGGCVSHYFGIVIRTRVTLSYVIEENTFWMRILPPIQSVKNEFPAEVVLIDSDDDEGVDQNTNAIAGTMNKKNKATPNKTKICKATLKRKRQKEIIVDDDDQDERNLKSCRSAKVRKQAVHLKSTRACEKQKNMNSRSKGLIKQRQPNSKFRVSHKQNGLKSTPKKSNKQQEYKYSRKPIILKLESDGSYVWEKIISRAVASSSKAQVMHFPKEVCRLAMGKLQSKMLVQTEAGDSFYCQIITAERNEFERFISKEWSKFVKRNNFQAGDKLIFNLQNPPTKLLIQIIRCSSYN 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04204 384 SMART B3_2 286 381 IPR003340 GO:0003677
Trre3g04204 384 Gene3D - 207 383 IPR015300 -
Trre3g04204 384 ProSiteProfiles B3 DNA-binding domain profile. 284 381 IPR003340 GO:0003677
Trre3g04204 384 MobiDBLite consensus disorder prediction 224 256 - -
Trre3g04204 384 CDD B3_DNA 299 379 IPR003340 GO:0003677
Trre3g04204 384 SUPERFAMILY DNA-binding pseudobarrel domain 293 379 IPR015300 -
Trre3g04204 384 MobiDBLite consensus disorder prediction 211 262 - -
Trre3g04204 384 Pfam B3 DNA binding domain 292 379 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04204 Trre-Chr3 53852035 53854128 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre3g04204 B3 4.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04204 - K10866 tpra:123904760 206.068