Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04200 ATGTCAACTTTTTCCAAAGTAACCTCTTTGGTTGATCTTCATACTAAAAGCTTAGATTGGACTATTAAGGTGAGGGTGGTGAGAATGTGGAACATTAAAAGCCTCATCAATCCAGACAAAATCTTTGAGATTCAACTTATCTTACTTGATCAAGAGGGTAAAAAGATCCAAGCAACTGTGCCTGCTGAATGTGTTGATCGTTTCTCCAACATTTTATTTGAAAGTGGTATATATATGATTGTGTATTTCTGTGTTGAAGAGAATGTTAGCTCATGTATGATCACTTTCAATCAGCTGAAGTTAGTCTTCAATCAGAGCACTATAATTTTTGAATCTCAGAGTTTAGCTATTCCTCGCTATTCCCTTACGTTATTCACTTCTCAAAGGATTGCAAACTATCGAAATGGCTCAAGTTATTTGATTGATTTTGTTGGGGTTGTTACCGATGTGTTTACAAAACCAGTTAATGAGATTGGTGAAGAGATGTCTAATGCTGTCAAAGTGTTATTAACTGACTCAAGAAGAGGTTCTTGTGAGTGTATTTTGGTTGGACAGTTTGCTGATCAGTTCAACAAAATGATGTTTGAATCCTCCACTGAGGTGCCTATTTTGGTATTGCAGTTTGTTAGGATTAATAGTAAAAGAGGAATTCCTTATGTTGAAAGTGTGGAGGATATTACTAAAGTTTTATTGAACCCTCAATTCATTGAAGTGGAGAAATTAAAGATTGATATGGGTTATATCAACAATTCTTATCCTTTGACTAAGACATGGTATTATTCAAGTTCTAAAGTTTGTAAGGAGTTGGAGTTCAATGGTTTGTACCCTCACAAAACTATATATGAATTTATCAACACATTTGAAGATGGATTGTTCGTTTTGTGTGGCAAAATGGTTGGTCTCTTCAAGGTGGATAAATGGTTTTACCCTGTTTGCTACTGTGGTGCTTTCTTGAATATTGCTTCTGGCTCATACTATTGTGCTCGCTGCCATGTTACTGTCTTCAGTGGTTCATCCAAATGTAAGGTTCAAGTTGGCTTCCAAGATCTCACATCTGCAGCATTGTTTCCCATGCTTGAAAGTTTGATTGAAGAAATTGATTGCATCAATAATAATGGATCATTATTTGGTGTAAGTAATCCTGAGGAGAAGGTTTTGATTGATAAGATGGTGCTTTTGATTGTTAAGATGATTAAAAGTTCTGATGATTTATCTGATGATGTTGTTGAAGTTTTGCGGATGACCGATGACATTGAACTTATTAAGCAATTTCATGTTGAAGGAAACAATTTTACACCATTGAAGAGTATGTTTCAAACAACTTCTTCTGATTTGGGATCTCAATTTGCCGAGTTTAGTATTCCAGCATGTTCTCCATCTTGTGTTGATGTTGGAAAGAGTGCATTCGTCGAAGATAATTTTCAAGCGATTCTTGATAGTACAGAGCTTGAATACCGCAAAAAATACAAAGAATTCAAAATTCGTAATGAATGTGGTTTGTGCATTGGTGGTGCGAGCGGTGAAGGCTGTTCTTCCAATATTAACTAA 1548 0.3547 MSTFSKVTSLVDLHTKSLDWTIKVRVVRMWNIKSLINPDKIFEIQLILLDQEGKKIQATVPAECVDRFSNILFESGIYMIVYFCVEENVSSCMITFNQLKLVFNQSTIIFESQSLAIPRYSLTLFTSQRIANYRNGSSYLIDFVGVVTDVFTKPVNEIGEEMSNAVKVLLTDSRRGSCECILVGQFADQFNKMMFESSTEVPILVLQFVRINSKRGIPYVESVEDITKVLLNPQFIEVEKLKIDMGYINNSYPLTKTWYYSSSKVCKELEFNGLYPHKTIYEFINTFEDGLFVLCGKMVGLFKVDKWFYPVCYCGAFLNIASGSYYCARCHVTVFSGSSKCKVQVGFQDLTSAALFPMLESLIEEIDCINNNGSLFGVSNPEEKVLIDKMVLLIVKMIKSSDDLSDDVVEVLRMTDDIELIKQFHVEGNNFTPLKSMFQTTSSDLGSQFAEFSIPACSPSCVDVGKSAFVEDNFQAILDSTELEYRKKYKEFKIRNECGLCIGGASGEGCSSNIN 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04200 515 Gene3D - 6 113 IPR012340 -
Trre3g04200 515 CDD RPA1_DBD_B_like 142 242 - -
Trre3g04200 515 Pfam Domain of unknown function DUF223 46 126 IPR003871 -
Trre3g04200 515 Gene3D - 116 248 IPR012340 -
Trre3g04200 515 CDD RPA1_DBD_A_like 21 109 - -
Trre3g04200 515 SUPERFAMILY Nucleic acid-binding proteins 7 113 IPR012340 -
Trre3g04200 515 Gene3D - 273 367 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04200 Trre-Chr3 53835501 53838140 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04200 5 366 Core DNA Replication Machinery Family AT2G06510 22.250 2.66e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04200 - - tpra:123886453 450.284