Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04190 ATGAAGAATCAAAATAGCTTAATTCTAGCTTTTCTCATTCTCATTCTCCAATTTACTACAACAAAAGCTGCTTTTGGTGTTGGTGTAGGTGTTGGGGGTGGAGTTGTTTGGATAGGGGGTGGAAATAACAATAACAATAACCAAAATCCAAAATCCTATGAATCTCCAACTTCTAAAATGGATTCAGCTTATTCAGTTCTACAAACATGGAAATCTTCAATCACTGATGACCCTTTAAAGATTCTAGATTCTTGGGTTGGTTCAAATGTTTGTTCATACAAAGGAATTTTTTGTGCTAATCCTGAAAATGGAATAGCTTCTACAGCAGCTTCTCCTTCAGTAGTTGTTGTAGCAATAGATCTAAACCATGCAAATCTTCAAGGAACATTTGTAAAAGAATTATCTTTACTCACTGATATGACACTTTTTCATCTCAACAGTAACAGATTCAGTGGAACAGTTCCTGAAACATTTAAAGATCTTGTTTCTCTTCAAGAGTTAGATTTAAGTAATAATCAACTTTCAGGTTCATTACCTCAAGAGCTTTTCAACAAGAATCTTGATGCTATATTTCTTAACAATAATCAATTTGAAGGTGAAATTCCTACAAATTTAGGTAACTCACCTGCTTCTGTGATTAACTTAGCTAACAACAAATTGAGTGGAAATATTCCAGCTAGTTTTGGTTTTATGGGATCAAAGATAAAAGAGATTTTGTTTCTGAATAATCAGTTAACTGGTTGTATACCAGAAGGAGTTGGACTTTTTACTGAAATGGAAGTTCTTGATGTGAGTTTCAATTCATTGATGGGTCATTTACCTGATACATTATCTTGTTTACAGAATATTGAAGTGCTTAATTTGGCTCATAATCAGCTTTCTGGAGAATTATCTGATATAATCTGTTCTTTGAGAAGTTTGGCTAATTTAACTGTTGCTTATAATTTCTTTTCTGGGTTTAGTCAACAATGCTCAAAGCTGAATTTTAGGAATGTTGGTTTTGATTTTTCACTTAATTGTATTCCTGGGAGGGACATGCAGAGACCTCAACCTGAATGTTCTATGATCCCAGGTGGAAGCTTAAGTTGTCTCAGAATTCCAACACCAAAACCTCTTGTTTGTGGTTCTATGTTTGTAAGTAACTCTAAGAACACTGATTCCACTTCACAATCACATTCTCCATGA 1185 0.3392 MKNQNSLILAFLILILQFTTTKAAFGVGVGVGGGVVWIGGGNNNNNNQNPKSYESPTSKMDSAYSVLQTWKSSITDDPLKILDSWVGSNVCSYKGIFCANPENGIASTAASPSVVVVAIDLNHANLQGTFVKELSLLTDMTLFHLNSNRFSGTVPETFKDLVSLQELDLSNNQLSGSLPQELFNKNLDAIFLNNNQFEGEIPTNLGNSPASVINLANNKLSGNIPASFGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMEVLDVSFNSLMGHLPDTLSCLQNIEVLNLAHNQLSGELSDIICSLRSLANLTVAYNFFSGFSQQCSKLNFRNVGFDFSLNCIPGRDMQRPQPECSMIPGGSLSCLRIPTPKPLVCGSMFVSNSKNTDSTSQSHSP 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04190 394 FunFam Nuclear pore complex protein NUP107 60 226 - -
Trre3g04190 394 Gene3D Ribonuclease Inhibitor 60 210 IPR032675 -
Trre3g04190 394 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 172 382 - -
Trre3g04190 394 Gene3D Ribonuclease Inhibitor 211 341 IPR032675 -
Trre3g04190 394 SUPERFAMILY L domain-like 64 327 - -
Trre3g04190 394 Pfam Leucine rich repeat N-terminal domain 62 98 IPR013210 -
Trre3g04190 394 Pfam Leucine rich repeat 143 197 IPR001611 GO:0005515
Trre3g04190 394 PRINTS Leucine-rich repeat signature 164 177 - -
Trre3g04190 394 PRINTS Leucine-rich repeat signature 280 293 - -
Trre3g04190 394 ProSiteProfiles Leucine-rich repeat profile. 163 185 IPR001611 GO:0005515
Trre3g04190 394 SMART LRR_typ_2 137 160 IPR003591 -
Trre3g04190 394 SMART LRR_typ_2 256 279 IPR003591 -
Trre3g04190 394 SMART LRR_typ_2 280 304 IPR003591 -
Trre3g04190 394 SMART LRR_typ_2 161 185 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04190 Trre-Chr3 53743496 53744752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04190 53 365 Leucine-rich Repeat extension Gene Families AT3G24480 43.895 2.09e-85 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04190 - - psat:127117995 639.417