Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04186 ATGGCGGATGTTGAACCCGAGGTAGCAGCAGCAGGAGTGCCAAAGAAGAGAACATTCAAGAAGTTCAGTTTCCGTGGTGTTGATCTCGATGCTCTCTTGGATATGAAAACTGATGAGCTTGTCAAGCTTTTCTCTGCTCGTGCCCGTAGAAGGTTTCAACGTGGTTTGACCCGCAAGCCTATGGCACTCATAAGAAGCTCCGCAAGGCGAAACGTGACGCACCACCAGGTGAGAAGCCAGAGCCAGTGA 249 0.51 MADVEPEVAAAGVPKKRTFKKFSFRGVDLDALLDMKTDELVKLFSARARRRFQRGLTRKPMALIRSSARRNVTHHQVRSQSQ 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04186 82 Gene3D 30s Ribosomal Protein S19; Chain A 8 81 IPR023575 GO:0003735|GO:0005840|GO:0006412
Trre3g04186 82 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 10 70 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04186 Trre-Chr3 53716672 53716920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04186 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 83.077 4.29e-32 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04186 K02958 - tpra:123918140 122.864