Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04166 ATGTCGGCTGTGGCTGGAACATTCGGCTATATTGCTCCAGAATATGCTCAAACAGTACGAGTCAACGAGAAGATAGATGTCTACAGTTTTGGAGTAGTCCTATTGGAACTGACAACCGGAAAAGAGGCCAATCATGGAGACGAGTACTCGTCTCTTGCAGAATGGGCGTGGCGCCACATTCAGATAGGAACCAATATAGAAGAACTTCTTGATGACGACGCTATGGAGCCTAGTAACTTGGAAGAAATGTGCAGCATCTTCAAACTCGGAGTTATGTGCACTTCAACATTGCCAGCTAGTAGACCATCGATGAAAGAAGTCTTGAAGGTATTGAGCGGCTGCAAGGATCCACTCGCCAACGCGGAGAAGATTGTTGATATTTATGATTCTGCTCCACTTCTTAAGAATATGAAATGGGAAAAGCAGTTGGAATTTTCAGCATAA 444 0.4414 MSAVAGTFGYIAPEYAQTVRVNEKIDVYSFGVVLLELTTGKEANHGDEYSSLAEWAWRHIQIGTNIEELLDDDAMEPSNLEEMCSIFKLGVMCTSTLPASRPSMKEVLKVLSGCKDPLANAEKIVDIYDSAPLLKNMKWEKQLEFSA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04166 147 ProSiteProfiles Protein kinase domain profile. 1 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04166 147 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 115 - -
Trre3g04166 147 Pfam Protein kinase domain 2 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04166 147 SUPERFAMILY Protein kinase-like (PK-like) 2 125 IPR011009 -
Trre3g04166 147 Gene3D Transferase(Phosphotransferase) domain 1 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04166 Trre-Chr3 53451011 53451583 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04166 1 141 Receptor kinase-like Gene Family AT5G25930 56.028 1.83e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre3g04166 Pkinase 3.4e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04166 - - gmx:100785907 229.18