Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04165 ATGACAAAATCTAAAATGTTAATTCAAATCTTGTTTTTCTTTTTCACCTATGCAAATTCTCAACAATCTCAATTATACAATGAAGAACATGAAATCCTAATGAAAATAAAAAAGCACTTTCAAAATCCATTATTCCTAAGTCATTGGAATACATCAAACACTTCATATCATTGTACATATCCAGAAATCCTTTGCAAAAATGATTCAATCATTTCACTTTCAATGATCAACACAAACATAACACAAACACTTCCACCTTTTCTTTGTGAACTCAAAAACCTCACTTACATTGATTTTCAATACAATTACATACCAAATGAGTTTCCAACATCACTTTACAATTGTTCCAAGCTTCAACATCTTGATCTTTCGCAGAACTATTTTGTCGGTAACATACCAAACGACATCGATAGGTTGGCCAATCTGCAGTTTCTTAACCTCGCCGCAAACAGCTTTTCAGGTGATATTCCAATGAGTATTGGAAACTTGAAGAATTTAAAGAGTCTTCAACTTTATCAGTGTCTTTTTAACGGTACTATTCCCGATGAAATTGGAAATTTGTTGAATCTTGAAACATTGTCTATGTTTTCATATAGTAAGCTACCTAGAACAAAGTTGCCATCTAGTTTTACTAAGTTGAAAAATTTAAGGATATTTGATATGCATGACTCTAACTTGGTTGGAGAAATTCCTGAAACAATTGGCGAAATGATTGCTTTGGAGGTTTTGGATTTATCAGGAAATTCTTTGAGTGGAAAAATTCCAAATGGCTTATTCACTTTGAAAAATTTGAGCACACTTTATCTTTACAAGAATAATCTTTCTGGAGATATACCTGACGTGGTTGAAGCGTTCGAGTTAACAAGCTTGGATCTTTCGTATAATAATCTCACGGGAAAAATACCAGGCGGTTTTGGAAGACTTGAAAACCTAAACTACTTGAGCTTGGATGTGAATCGATTGTCCGGAGAAGTACCGGAAAGCATCGGTAATCTTCGGTTTCTAACTGATTTTCTTGTTTTTCAGAACAACTTATCAGGTAATCTTCCTCAAGGTTTTGGTAAGTTTTCTAAACTTGAAACTTTTCAGATTGGATCTAATAGTTTCAATGGAAAGCTGCCACAGAATTTGTGCTATCATGGAAGGTTAGTTGGTTTAACTGCTAATGACAATAATCTAAGCGGCGAGTTGCCGAAATCTTTAGGTAGTTGTAGCAGTTTGCAGATAGTGAGCGTTGAGAATAATAAGTTTTCTGGTAACATTCCTGATGGTTTATGGACATCAATGAACTTGTCAATAATTAGGATAAGTGAGAACATGTTCACAGGCCAGCTTCCCGAAAGATTGGCTCGGAATCTTTCGGAATTAGCCGTAAGTTACAATCAGTTTTCTGGTAGAATTCCGAACGGAGTTTCTTCATGGAAGAATGTAGTGAAGTTCAATGCTAGTAACAACTTTTTCAATGGAAGTATTCCGTTGGAGTTAACATCGCTTCCTCGGCTATCAACTCTTTTGCTAGATCAGAACCAACTCACCGGTCGAATTCCATCGGATATCATCTCATGGAAATCGCTACAAAGATTAGACTTGAGCCACAATCAACTCTCTGGAGATATACCGGATGCAATTTGTCGGTTACCTTCTCTAGTTATATTGGACTTATCAGTAAACAAAATCTCCGGCCGAATTCCACCTCAGCTATCTTTGAGACTCACAAATCTCAATCTATCATCAAATGATTTGATAGGGCGGATTCCGAGTGATTTCGAAAGCCTTGCATATGAAAGCAGCTTTCTGAACAATTCTGGTCTATGTGTTGATACATTAGGACTAAACCTTGCTTTGTGCAATTCTGGAACTGCAAGAAGAAGAAGAGGTGACTCATCCATGTCTAAGGCTCTGGTCATAATCTTGGTGGTAGTAGCTTCGTTAACGGTTTTCTTGGCGTTATTCTTGTCGATCAGTTTTTACCGGAAAAGAAAGCGATTAATGAAAAGGACATGGAAGCTAACTTCATTTCAGAGACTAAGTTTCACAAAATCAAACATCGTGTCCTCGATGTCAGAACATAATATCATTGGTAGCGGTGGATTTGGTTCTGTTTATCGCGTCGCTGTTGATGGTTTAGGCTATGTTGCAGTGAAAAAGATAAAGGGAAATAGCAAAAGGTTGGATCAGAAACTTGTGGATTCATTTCTTGCAGAAGTTGAAATACTTAGCAATATTCGACATAACAATATTGTGAAGTTGTTGTGTTGTATCTCAAGTGATGATTCGCTACTACTTGTATACGAGTATCATGAACATCAAAGCCTTGATAGGTGGCTGCACAAGAAAAATAAGACACCGGTTGTGTCGGGAACCGTAAATGGTAACATCCTTGATTGGCCAAAGAGATTGCATATAGCCATTGGAGCTGCACAAGGTTTGTGCTACATGCATAACGATTGCTCGCCACCTATTGTTCATCGAGACATGAAAACAAGTAACATTCTTTTGGATACTCAATTCAATGCAAAAGTTGCTGATTTTGGTTTGGCTAGGATATTGGTCAAGCCGGAAGAACTCGCCACCATGTCGGCTGTGGCTGGAACATTCGGCTATATTGCTCCAGAATATGCTCAAACAGTACGAGTCAACGAGAAGATAGATGTCTACAGTTTTGGAGTAGTCCTATTGGAACTGACAACCGGAAAAGAGGCCAATCATGGAGACGAGTACTCGTCTCTTGCAGAATGGGCGTGGCGCCACATTCAGATAGGAACCAATATAGAAGAACTTCTTGATGACGACGCTATGGAGCCTAGTAACTTGGAAGAAATGTGCAGCATCTTCAAACTCGGAGTTATGTGCACTTCAACATTGCCAGCTAGTAGACCATCGATGAAAGAAGTCTTGAAGGTATTGAGCGGCTGCAAGGATCCACTCGCCAACGCGGAGAAGATTGTTGATATTTATGATTCTGCTCCACTTCTTAAGAATATGAAATGGGAAAAGCAGTTGGAATTTTCAGCATAA 3018 0.3814 MTKSKMLIQILFFFFTYANSQQSQLYNEEHEILMKIKKHFQNPLFLSHWNTSNTSYHCTYPEILCKNDSIISLSMINTNITQTLPPFLCELKNLTYIDFQYNYIPNEFPTSLYNCSKLQHLDLSQNYFVGNIPNDIDRLANLQFLNLAANSFSGDIPMSIGNLKNLKSLQLYQCLFNGTIPDEIGNLLNLETLSMFSYSKLPRTKLPSSFTKLKNLRIFDMHDSNLVGEIPETIGEMIALEVLDLSGNSLSGKIPNGLFTLKNLSTLYLYKNNLSGDIPDVVEAFELTSLDLSYNNLTGKIPGGFGRLENLNYLSLDVNRLSGEVPESIGNLRFLTDFLVFQNNLSGNLPQGFGKFSKLETFQIGSNSFNGKLPQNLCYHGRLVGLTANDNNLSGELPKSLGSCSSLQIVSVENNKFSGNIPDGLWTSMNLSIIRISENMFTGQLPERLARNLSELAVSYNQFSGRIPNGVSSWKNVVKFNASNNFFNGSIPLELTSLPRLSTLLLDQNQLTGRIPSDIISWKSLQRLDLSHNQLSGDIPDAICRLPSLVILDLSVNKISGRIPPQLSLRLTNLNLSSNDLIGRIPSDFESLAYESSFLNNSGLCVDTLGLNLALCNSGTARRRRGDSSMSKALVIILVVVASLTVFLALFLSISFYRKRKRLMKRTWKLTSFQRLSFTKSNIVSSMSEHNIIGSGGFGSVYRVAVDGLGYVAVKKIKGNSKRLDQKLVDSFLAEVEILSNIRHNNIVKLLCCISSDDSLLLVYEYHEHQSLDRWLHKKNKTPVVSGTVNGNILDWPKRLHIAIGAAQGLCYMHNDCSPPIVHRDMKTSNILLDTQFNAKVADFGLARILVKPEELATMSAVAGTFGYIAPEYAQTVRVNEKIDVYSFGVVLLELTTGKEANHGDEYSSLAEWAWRHIQIGTNIEELLDDDAMEPSNLEEMCSIFKLGVMCTSTLPASRPSMKEVLKVLSGCKDPLANAEKIVDIYDSAPLLKNMKWEKQLEFSA 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04165 1005 Pfam Leucine rich repeat 93 151 IPR001611 GO:0005515
Trre3g04165 1005 Pfam Leucine rich repeat 499 559 IPR001611 GO:0005515
Trre3g04165 1005 Gene3D Phosphorylase Kinase; domain 1 664 766 - -
Trre3g04165 1005 CDD STKc_IRAK 693 969 - -
Trre3g04165 1005 PRINTS Leucine-rich repeat signature 287 300 - -
Trre3g04165 1005 PRINTS Leucine-rich repeat signature 546 559 - -
Trre3g04165 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672|GO:0006468
Trre3g04165 1005 ProSitePatterns Protein kinases ATP-binding region signature. 693 716 IPR017441 GO:0005524
Trre3g04165 1005 FunFam Receptor-like protein kinase HSL1 isoform A 26 178 - -
Trre3g04165 1005 ProSiteProfiles Leucine-rich repeat profile. 524 546 IPR001611 GO:0005515
Trre3g04165 1005 Pfam Leucine Rich Repeat 570 592 IPR001611 GO:0005515
Trre3g04165 1005 Pfam Leucine Rich Repeat 240 258 IPR001611 GO:0005515
Trre3g04165 1005 Pfam Leucine Rich Repeat 287 307 IPR001611 GO:0005515
Trre3g04165 1005 SUPERFAMILY Protein kinase-like (PK-like) 678 969 IPR011009 -
Trre3g04165 1005 Gene3D Transferase(Phosphotransferase) domain 1 768 988 - -
Trre3g04165 1005 SUPERFAMILY L domain-like 27 282 - -
Trre3g04165 1005 Gene3D Ribonuclease Inhibitor 339 613 IPR032675 -
Trre3g04165 1005 Gene3D Ribonuclease Inhibitor 201 338 IPR032675 -
Trre3g04165 1005 FunFam Leucine-rich repeat receptor-like protein kinase TDR 305 618 - -
Trre3g04165 1005 SMART serkin_6 687 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04165 1005 SMART LRR_typ_2 91 115 IPR003591 -
Trre3g04165 1005 SMART LRR_typ_2 546 570 IPR003591 -
Trre3g04165 1005 SMART LRR_typ_2 163 187 IPR003591 -
Trre3g04165 1005 SMART LRR_typ_2 237 261 IPR003591 -
Trre3g04165 1005 SMART LRR_typ_2 308 332 IPR003591 -
Trre3g04165 1005 SMART LRR_typ_2 498 522 IPR003591 -
Trre3g04165 1005 SUPERFAMILY RNI-like 199 581 - -
Trre3g04165 1005 Gene3D Ribonuclease Inhibitor 26 200 IPR032675 -
Trre3g04165 1005 FunFam Receptor-like protein kinase HSL1 667 766 - -
Trre3g04165 1005 ProSiteProfiles Protein kinase domain profile. 687 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04165 1005 FunFam Kinase family with leucine-rich repeat domain-containing protein 767 986 - -
Trre3g04165 1005 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 183 283 - -
Trre3g04165 1005 Pfam Protein kinase domain 689 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04165 1005 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 240 971 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04165 Trre-Chr3 53448437 53451583 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04165 29 992 Receptor kinase-like Gene Family AT5G25930 50.874 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre3g04165 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04165 - - gmx:100785907 1399.42