Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04164 ATGGCTCCAGAATATGTTCAAACAACAAAAGCTAGTGAAAAAATTGATGTCTACAGCTTTGGTGTTATCCTATTGGAACTGACAACTGGTAAAGAAGCTAACTATGGTGATGAGCATTCATCTCTTGCAGAGTGGTCTTGGCGCCAAATTCGAGAAGGAAGCAATATAGAAGAGTTGCTTGACAAAGAAGTAATGGAACCAATTCACTCTGATGGAATGTGCAAAGTTTTCAAACTTGGTGTGATGTGTACTTCAACACTTCCATCTAGTAGACCTTCCATGAAAGAGGTTTTGGAAGTATTGCTCAATTGTGGTGATTTGTTTAGTTATGGTGAGAGGAATATTGGACATAATAATGATGTTGTTCCACTTCTTAGGAATTCTAAAAGAGAGAGTAAATTGGATATTGATAATGATAGTTAG 423 0.3664 MAPEYVQTTKASEKIDVYSFGVILLELTTGKEANYGDEHSSLAEWSWRQIREGSNIEELLDKEVMEPIHSDGMCKVFKLGVMCTSTLPSSRPSMKEVLEVLLNCGDLFSYGERNIGHNNDVVPLLRNSKRESKLDIDNDS 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04164 140 Gene3D Transferase(Phosphotransferase) domain 1 1 114 - -
Trre3g04164 140 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 103 - -
Trre3g04164 140 Pfam Protein kinase domain 1 99 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04164 140 SUPERFAMILY Protein kinase-like (PK-like) 1 101 IPR011009 -
Trre3g04164 140 ProSiteProfiles Protein kinase domain profile. 1 108 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04164 Trre-Chr3 53442463 53443597 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04164 1 105 Receptor kinase-like Gene Family AT5G25930 58.095 2.39e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre3g04164 Pkinase 5.3e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04164 - - cam:101515509 241.506