Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04160 ATGTCAGCTGTGATTGGATCATTTGGTTATATGGCTCCAGAATATGTTCAAACAACTAAAGTGAATGAAAAGATTGATGTCTTCAGCTTTGGTGTTATCCTATTGGAACTAACAACTGGTAAAGAAGCTACTTATGGTGATGAACATTCATCACTTGTAGAATGGTCATGGAGGCATGTTCATGAAGGAAGCAACATAGAAGAGCTTCTTGACAAAGATTTTGTGGAACAAAGTTATTTGCATGAAATGTGTTGCATTTTCAAACTTGGAATAATGTGTACTGCTACACTTCCTTCTAGTAGACCTTCCATGAAAGAGGTGTTAAATATATTGCTTAGATTTGAAGGAGGGATTGTGTTTGGAGAGAGCAATGTTGATGTTGGGGAATATGATGTTGCTCCTTTTCTTAAAAATTCAAAAAGAGATAGTAGGTTAGATTTTGTTGATAGTGATAGTGATTAA 462 0.3506 MSAVIGSFGYMAPEYVQTTKVNEKIDVFSFGVILLELTTGKEATYGDEHSSLVEWSWRHVHEGSNIEELLDKDFVEQSYLHEMCCIFKLGIMCTATLPSSRPSMKEVLNILLRFEGGIVFGESNVDVGEYDVAPFLKNSKRDSRLDFVDSDSD 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04160 153 Pfam Protein kinase domain 2 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04160 153 Gene3D Transferase(Phosphotransferase) domain 1 1 118 - -
Trre3g04160 153 SUPERFAMILY Protein kinase-like (PK-like) 2 109 IPR011009 -
Trre3g04160 153 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 3 112 - -
Trre3g04160 153 ProSiteProfiles Protein kinase domain profile. 1 114 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04160 Trre-Chr3 53386439 53387347 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04160 1 111 Receptor kinase-like Gene Family AT5G25930 61.261 7.98e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre3g04160 Pkinase 2.9e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04160 - - cam:101515509 267.314