Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04159 ATGACATTATTAGCCACATCTCATATCAAATTTTTATTTTACTTTCATATATCCCTTTTTCTAATTTTGAGCCATGCAAATTCTCAGTCTCAACAAGAACATTTAATCTTATTAAAAATAAAACATCACCTACAAAATCCATCTTTTCTTAGTCAATGGAACTCATCAAACACCTCTTATTGTTATTGGCAAGAAATCACATGTATCAAAGGTTTTGTCACAGGGTTGACTTTGGTCAACTCCAACATAACTCAAACTATACCTTCTTTCATATGTGACCTTAAAAACCTCACACATGTTGATTTCAGCAAAAATTTCATTCCTGGTGAGTTTCCAAAATCTCTATTTAAATGTTCCAAACTTGAGTATCTTGATTTGTCAATGAATAACTTTGTTGGCAAGATTCCTTATGACATTCAAAGTTTGGTTAATTTGCAATATCTCAACCTTGGTTCAACCTATTTTAGTGGTGAAATTCCTTCTAGTATTGGAAATCTTAAGGATTTAAGATTCCTTTACCTTCAATATTGTTCATTTAATGCTACTTTTCCTTATGAAATTGGTAACTTGTTCAACCTTGAATACTTGGATATGTCATCTAATTATTTTTTACCTCCTTTGAAGCTTCCATTAAGCTTAACCAAGTTGAAAAAATTGAAAGTTTTTTACATGTATGGTTCAAATTTAGTAGGGGAAATTCCTGAGGCTATTGGTGAAATGGTTGCATTGGAGAATTTGGATTTATCAAAAAATAATTTAAATGGAAAAATTCCTAGTGGTTTGTTCATGTTGAAAAATTTGAGCATAGTATATCTTGATAGAAATAGTCTCTTTGGAGAGATACCAAGTATGGTTGAAGCATTGAATTTGGTTGAACTTGATCTTGCAGAGAATAATCTTACAGGAAAAATACCAAATGATTTTGGAAAGTTGATAAAGTTAACATATTTGAATTTGTTCATGAACAAGTTTTCAGGAGAGATTCCACAAAGCATAGGAAAACTTCCATCTTTAAAAGGGTTTAGTATCTTTAAGAACAAGTTTTCAGGTACAATTCCTTCTGATTTTGGACTTTACTCGAAGCTCGAATATTTTGATATAGCAATGAACAATTTTAAGGGAAGTTTACCATATAATTTGTGTTATCATGGTAAGTTACAAAACTTAACTGTTTATGAAAATCATTTAAGTGGTGAGTTACCAAAATCAATTGGAAATTGTAGTAGTTTGGTCGAGCTGAAAATTTACAAGAATGAGTTTTATGGTAAAATTCCTAGTGGTCTTTTTTGGCATACCAATTTGGTATTTTTCATGATAAGTCATAATAAGTTTATTGGTGAGCTTCCACAAAATTTGTCTTCAAATATTTCAATTATTGATATAAGTTACAATCAATTTTATGGTGGAATTCCAATTGGAGTATCTTCTTGGACTAATCTGGTTGAGTTTATAGCAAGCAAGAATTATCTTAATGGAACTTTTCCTCAAGAGCTAACAAATCTTCCTAAGCTTGAAACATTGTTGCTTGATCAAAATCAGCTTAAAGGGTCACTTCCAAAAGATATAATATCATGGAAATCATTAGTGACACTAAATTTGAGTCAAAATCAACTCAATGGACAAATTCCAATATCAATTGGTCATTTGCCTTCACTTGGTGTTCTTGATCTATCTGAAAATCAATTCACGGGCAAAATACCGTCTATACTTCCTAGAATCACAAATCTCAATCTATCATCTAATATTTTGACAGGAAGAGTTCCTAGTGAATTTGAAAATTCGGCTTTCGATAGAAGCTTTTTGAACAATTCTGGTTTATGTGCTGATACACCAAAACTTAGCCTTACCCTTTGCAATTTTGGCTTTAAAAAATTAACCAAAACCTCACATTGGTCTCTTGGTTTGATTATTAGCCTAATTCTGGTGACTTTCTTGTTGGCTTTGTTTGCATTATTCTTAATTATCAAACTTTACAGAAAAACAAATCAAGGGTTTGATAACTCATCATGGAAACTCATTTCATTTCAAAGACTAAGTTTCACAGAATCAAACATAGTTTCCTCATTGACAGAACAAAACATCATTGGAAGTGGTGGATTCGGCACGGTATACCGCGTTCCGGTCGACGGTTTAACCTATGTTGCTGTGAAAAAAATCACTAGCAACAGAAAGTTAAGGCAAAAGCTCGAAACTTCGTTTCGTGCAGAAGTTAAAATATTGAGCAATATTCGACATCGAAACATTGTGAAGTTGTTGTGTTGTATCTATAATGTGGATTCAATGATGCTTGTGTATGAGTATTTGGAACACAGCAGCCTAGACAAGTGGCTGCACAACAGGAATAAGTCATCAAATATGTCAGGTTCGGCGCGACGTGTTGTCCTTGATTGGCCGAAGCGATTGCGAATAGCCATTGGGATTGCTCATGGTTTGTGCTACATGCACCACGATTGCTCGCCTCCGATTGTTCATCGCGATATAAAAACAAGCAACATTCTTTTGGATTCTCAATTCAATGCAAAAGTTGCTGATTTTGGTCTTGCTAGGTTGTTGATAAAGGCAGGACAATCTAATACCATGTCAGCTGTGATTGGATCATTTGGTTATATGGCTCCAGAATATGTTCAAACAACTAAAGTGAATGAAAAGATTGATGTCTTCAGCTTTGGTGTTATCCTATTGGAACTAACAACTGGTAAAGAAGCTACTTATGGTGATGAACATTCATCACTTGTAGAATGGTCATGGAGGCATGTTCATGAAGGAAGCAACATAGAAGAGCTTCTTGACAAAGATTTTGTGGAACAAAGTTATTTGCATGAAATGTGTTGCATTTTCAAACTTGGAATAATGTGTACTGCTACACTTCCTTCTAGTAGACCTTCCATGAAAGAGGTGTTAAATATATTGCTTAGATTTGAAGGAGGGATTGTGTTTGGAGAGAGCAATGTTGATGTTGGGGAATATGATGTTGCTCCTTTTCTTAAAAATTCAAAAAGAGATAGTAGGTTAGATTTTGTTGATAGTGATAGTGATTAA 3039 0.3346 MTLLATSHIKFLFYFHISLFLILSHANSQSQQEHLILLKIKHHLQNPSFLSQWNSSNTSYCYWQEITCIKGFVTGLTLVNSNITQTIPSFICDLKNLTHVDFSKNFIPGEFPKSLFKCSKLEYLDLSMNNFVGKIPYDIQSLVNLQYLNLGSTYFSGEIPSSIGNLKDLRFLYLQYCSFNATFPYEIGNLFNLEYLDMSSNYFLPPLKLPLSLTKLKKLKVFYMYGSNLVGEIPEAIGEMVALENLDLSKNNLNGKIPSGLFMLKNLSIVYLDRNSLFGEIPSMVEALNLVELDLAENNLTGKIPNDFGKLIKLTYLNLFMNKFSGEIPQSIGKLPSLKGFSIFKNKFSGTIPSDFGLYSKLEYFDIAMNNFKGSLPYNLCYHGKLQNLTVYENHLSGELPKSIGNCSSLVELKIYKNEFYGKIPSGLFWHTNLVFFMISHNKFIGELPQNLSSNISIIDISYNQFYGGIPIGVSSWTNLVEFIASKNYLNGTFPQELTNLPKLETLLLDQNQLKGSLPKDIISWKSLVTLNLSQNQLNGQIPISIGHLPSLGVLDLSENQFTGKIPSILPRITNLNLSSNILTGRVPSEFENSAFDRSFLNNSGLCADTPKLSLTLCNFGFKKLTKTSHWSLGLIISLILVTFLLALFALFLIIKLYRKTNQGFDNSSWKLISFQRLSFTESNIVSSLTEQNIIGSGGFGTVYRVPVDGLTYVAVKKITSNRKLRQKLETSFRAEVKILSNIRHRNIVKLLCCIYNVDSMMLVYEYLEHSSLDKWLHNRNKSSNMSGSARRVVLDWPKRLRIAIGIAHGLCYMHHDCSPPIVHRDIKTSNILLDSQFNAKVADFGLARLLIKAGQSNTMSAVIGSFGYMAPEYVQTTKVNEKIDVFSFGVILLELTTGKEATYGDEHSSLVEWSWRHVHEGSNIEELLDKDFVEQSYLHEMCCIFKLGIMCTATLPSSRPSMKEVLNILLRFEGGIVFGESNVDVGEYDVAPFLKNSKRDSRLDFVDSDSD 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04159 1012 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 237 970 - -
Trre3g04159 1012 Pfam Protein kinase domain 691 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04159 1012 SUPERFAMILY RNI-like 292 594 - -
Trre3g04159 1012 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 186 284 - -
Trre3g04159 1012 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 285 380 - -
Trre3g04159 1012 Pfam Leucine Rich Repeat 289 311 IPR001611 GO:0005515
Trre3g04159 1012 ProSiteProfiles Protein kinase domain profile. 689 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04159 1012 Gene3D Transferase(Phosphotransferase) domain 1 768 976 - -
Trre3g04159 1012 Pfam Leucine rich repeat N-terminal domain 32 68 IPR013210 -
Trre3g04159 1012 Gene3D Ribonuclease Inhibitor 362 620 IPR032675 -
Trre3g04159 1012 SUPERFAMILY L domain-like 48 344 - -
Trre3g04159 1012 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524
Trre3g04159 1012 Gene3D Phosphorylase Kinase; domain 1 666 767 - -
Trre3g04159 1012 Gene3D Ribonuclease Inhibitor 22 79 IPR032675 -
Trre3g04159 1012 Gene3D Ribonuclease Inhibitor 208 358 IPR032675 -
Trre3g04159 1012 Gene3D Ribonuclease Inhibitor 80 207 IPR032675 -
Trre3g04159 1012 FunFam Kinase family with leucine-rich repeat domain-containing protein 768 983 - -
Trre3g04159 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 822 834 IPR008271 GO:0004672|GO:0006468
Trre3g04159 1012 FunFam Receptor-like protein kinase HSL1 isoform A 30 181 - -
Trre3g04159 1012 SUPERFAMILY Protein kinase-like (PK-like) 680 970 IPR011009 -
Trre3g04159 1012 FunFam Receptor-like protein kinase HSL1 669 767 - -
Trre3g04159 1012 SMART serkin_6 689 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04159 1012 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 383 620 - -
Trre3g04159 1012 SMART LRR_typ_2 549 577 IPR003591 -
Trre3g04159 1012 SMART LRR_typ_2 142 166 IPR003591 -
Trre3g04159 1012 SMART LRR_typ_2 240 264 IPR003591 -
Trre3g04159 1012 SMART LRR_typ_2 501 525 IPR003591 -
Trre3g04159 1012 SMART LRR_typ_2 94 118 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04159 Trre-Chr3 53383862 53387347 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04159 22 1007 Receptor kinase-like Gene Family AT5G25930 50.199 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre3g04159 Pkinase 2.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04159 - - cam:101515509 1584.7