Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04155 ATGTCAACTGTGGCTGGAACATTTGGCTATATGGCTCCAGAATATGTTCAAACAACTAAAGTCAGTGAAAAGATTGATGTTTTTAGCTTTGGTGTTATCCTATTGGAACTAACAACTGGTAAAAAGGCTACTCGTGGTGATGACCATTCATCTCTTGCAGACTGGGCTTGGCGCCACATTCAAACAGAAAGCAATATTGACGAGTTGCTTGACAAAGAAGTAATGAAACCAAGTCACTTGGATGGAATGTGTGGCGTTTTCAAACTTGGGATAATGTGTACTGCTAAACTTCCTTCTAGAAGACCTTCCATGAAAGATGTGTTACACATATTGCTTAGATGTGAAGGAGGGATTGTGTTTGGTCAGAGGAATGATATTGTTGGGGAATATGATGTTGTCCCTTTACTTTAA 411 0.3942 MSTVAGTFGYMAPEYVQTTKVSEKIDVFSFGVILLELTTGKKATRGDDHSSLADWAWRHIQTESNIDELLDKEVMKPSHLDGMCGVFKLGIMCTAKLPSRRPSMKDVLHILLRCEGGIVFGQRNDIVGEYDVVPLL 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04155 136 Gene3D Transferase(Phosphotransferase) domain 1 1 119 - -
Trre3g04155 136 Pfam Protein kinase domain 2 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04155 136 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 113 - -
Trre3g04155 136 ProSiteProfiles Protein kinase domain profile. 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04155 136 SUPERFAMILY Protein kinase-like (PK-like) 2 109 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04155 Trre-Chr3 53276284 53276977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04155 1 111 Receptor kinase-like Gene Family AT5G25930 56.757 8.27e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre3g04155 Pkinase 6.8e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04155 - - cam:101515509 210.69