Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04145 ATGGACCCTAAAAAAGAGGAAGGGATGAGAAAAGTAAAAGAGGGAGGTTCAATAGGCATAATTTTGAGATATGGTGATTGGATTGATGTTGTTTTAATGTTGATGGGTGCTTTGGGAGCAATAGGAGATGGAATGTCAACAAATGTTTTGCTTCTCTTTGCTAGCCGTATTATGAACAGCTTAGGTGGTGGTAATAATAACAATAGTGAGACTTCCATGTCTGAGGTTGAAAAGTGCAGCTTATATTTTGTCTACTTGGGATTGGCAGCAATGGTGGTGGCTTTCATGGAAGGCTATTGTTGGAGCAAAACAAGTGAGAGGCAGGTGTTGAGAATTCGTTACAAGTATTTGGAAGCTGTTCTTAGACAAGAAGTGGGATTTTTTGATTCACAAGAAACAAATACTTCTGAAATCATTAATAGCATATCAAAGGACACTAATCTAATACAAGAAGTTCTAAGTGAAAAGGTGCCTTTATTTTTGATGCAATCATCATCATTCATCTCAGGGATTTGTTTTGCTACATACTTCTCATGGAGATTAGCATTAGTAGCATTTCCAACACTTCTTTTACTCATAATCCCTGGATTAATATATGGAAAATACCTAATCTATTTATCAAAATCATCAATGAAAGAATATGGAAAAGCAAATGCAATTGTTCAACAAGCACTAAGCTCAATAAAAACAGTTTATTCATTCACTGCTGAGAAGAGAACAATGGAAAAATATTCAGAAATATTAGAAAAAACTTCAAAGCTTGGAATTAAACAAGGTATAGCAAAAGGTTTAGCTGTTGGAAGCACTGGTTTGTCTTTTGCAATTTGGGCTTTTCTTGCTTGGTATGGAAGTCATTTGGTTATGTATAAAGGTGAAAGTGGTGGAAGAATCTATGCTGCTGGAATTTGCTTCATAATGAGTGGATTATCCTTGGGAGTGGTACTTCCTGATTTGAAATACTTCACAGAAGTATCAATAGCTGCATCAAGAATATTTGCTATGATTGATAGAACACCAGAAATTGATAGTGAAGACACAACAAAAGGAATCATATTAGAAACCATAAGTGGCAAATTAAATTTTGAGCATGTAAAATTCACATACCCTTCTAGACAAGAAAGTGTTGTACTTTATGATTTTAATCTTGAAATTGAAGCTGGAAAAACTGTTGCATTAGTTGGTGCAAGTGGAAGTGGTAAATCAACAGCAATAGCATTAGTACAAAGATTTTATGATGCAAATGAAGGTGTTGTTAAGGTTGATGGTTTTGATATAAAAAGTTTACAATTGAAATGGATAAGAGGTAAAATGGGACTTGTGAGTCAAGAACATGCTATGTTTGGTACATCTATTAAGGAAAATATTATGTTTGGTAAAAATGATGCTACCATGGATGAAATTGTTGCTGCTGCTACTGCTGCTAATGCTCATAATTTCATTAGGCAACTTCCTGATGGATATGAAACCAAGATTGGTGAAAGAGGAGCACTGCTTTCAGGAGGACAAAAGCAAAGAATAGCTATTGCAAGAGCTATCATAAAAAATCCTGTAATTCTCTTACTTGATGAAGCAACTAGTGCACTTGACTCTGAATCTGAATTATTGGTCCAAAATGCCCTTGATCAAGCCTCCATGGGAAGGACTACTTTGGTTGTTGCTCACAAGCTATCAACAATCAGAAATGCAGACCTAATAGCAGTTGTAAGTAATGGTTGCATCATTGAAAGTGGAACACACAATGAACTAATCAACATTCCAAATGGCCACTATGCAAAATTAGCAAAATTACAAACACAATTAAGCATTAATGATGATCAAGATCAAAATCAAGAACAACAAAATATTCTTCTTTCTGCTGCAAGAAGTAGTGCAGGTAGAACAAGCACTGCAAGATCAAGTCCTGCCGTATTCTTTCCGAAATCACCATTACCTAATGATATAATCACTTCTCAAATTTCTCATCCATCACCTTCATTTTCAAGGCTTCTTTGTATGAATTCGCCCGAATGGAAACAAGGACTAATTGGAACATTCTCAGCTATAGCATTTGGTTCAATTCAACCGATTTATGCATTAACAATCGGTGGCATGATTTCGGCTTTTTTCGCTACAAGTCATCAAGAAATGAAACACAGAATCATGAACTATTCATTGATTTTCACTTCTCTATCGCTCGCTTCGATTATACTCAATCTATTGCAACACTACAATTTCGCTTATATGGGAGCAAAGTTAACAAAAAGGGTAAGATTATGTATGTTGGAGAAAATCTTAACCTTCGAAACCGCTTGGTTTGATGAAGAAAAAAACTCTGGTGGTGCGTTGTGTTCAAGGTTAAGTAACGAAGCTTCGATGGTGAAGTCGCTCGTTGCTGATAGAGTATGTTTACTTGTTCAAACCGCTTCGGCTGTGACAATCGCGATGATCATAGGTCTTGTTGTAGCATGGAAGCTAGCACTTGTTATGATTGCAGTTCAACCGCTTACAATACTTTGTTTTTATACGCGAAAGGTTTTGCTTTCTACGCTTTCGACTAAATTTGTTAAGGCGCAGAACCAAAGCACGCAGATTGCTGTCGAAGCGGTTTATAATCACAGAATTGTGACTTCGTTTGGAAGCATCGAAAAAGTTTTGAGACTGTTTGATGAAGCGCAAGAGGCGCCGAGGATGGAAGCTAGGAAGAAATCTTGGCTAGCCGGTATTGGTATGGGATCTGCTCAGTGTTTAACATTTATGTGTTGGGCTTTGGATTTTTGGTATGGTGGTAGATTGGTCGAAAAGAGAGAAATTTCTTCGGGGGATGTGTTTAAGACTTTTTTTGTGTTGGTTAGTACCGGAAAAGTTATAGCTGAAGCCGGTAGCATGACTTCTGATCTTGCGAAAAGCTCAACAGCAGTTGCATCAGTGTTTGAAATTCTTGATAGACAATCACTTATTCCAAAGGATGGAGAAGATACCAATGGAATTATGTTGGAAAAGCTAAGTGGAAAAATAGAATTAAAGAATGTTGATTTCTGTTATCCAAGTAGAGCAAAGACACCAATTTTGAACAAATTTTGTTTGGAAGTAAAGCCAGGAAAAAGTGTTGGACTAGTTGGAAAAAGTGGATGTGGAAAATCAACAGTGATTGCATTAATACAAAGATTCTATGATGTTGAAAGAGGATCAGTGAAAATTGATGATGTGGATTTAAGAGAATTAGATATTCATTGGTATAGACAACAAACTGCATTAGTAAGTCAAGAACCTGTGATATATTCTGGTAGCATAAAGGATAACATTTTGTTTGGAAAACAAGATGCAAATGAAAATGAAGTTGTTGAAGCTGCTAGATCTGCAAATGCTCATGATTTCATATCATCATTGAAAGATGGATATGAAACTGAATGTGGAGAAAGAGGAGTTCAATTATCAGGAGGACAAAAACAAAGATTAGCAATTGCAAGAGCCATAATCAGAAATCCAATAATACTTCTACTAGATGAGGCAACAAGTGCTTTAGATGTGCAATCAGAACAAGTTGTTCAAGAAGCACTTGATAGGATTATGGTTGGAAGAACTACCATTGTTGTGGCACATAGACTTAACACAATTAAAGAACTTGATTCAATTGCTTATGTGTTAGAGGGTAAGGTTGTAGAACAAGGAAGCTATTCTCAGCTTAAGCACAAGAGAGGTGCTTTTTTCAACCTTGCCAACCATCAAATCCAAACTTAG 3717 0.3624 MDPKKEEGMRKVKEGGSIGIILRYGDWIDVVLMLMGALGAIGDGMSTNVLLLFASRIMNSLGGGNNNNSETSMSEVEKCSLYFVYLGLAAMVVAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFDSQETNTSEIINSISKDTNLIQEVLSEKVPLFLMQSSSFISGICFATYFSWRLALVAFPTLLLLIIPGLIYGKYLIYLSKSSMKEYGKANAIVQQALSSIKTVYSFTAEKRTMEKYSEILEKTSKLGIKQGIAKGLAVGSTGLSFAIWAFLAWYGSHLVMYKGESGGRIYAAGICFIMSGLSLGVVLPDLKYFTEVSIAASRIFAMIDRTPEIDSEDTTKGIILETISGKLNFEHVKFTYPSRQESVVLYDFNLEIEAGKTVALVGASGSGKSTAIALVQRFYDANEGVVKVDGFDIKSLQLKWIRGKMGLVSQEHAMFGTSIKENIMFGKNDATMDEIVAAATAANAHNFIRQLPDGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLVVAHKLSTIRNADLIAVVSNGCIIESGTHNELINIPNGHYAKLAKLQTQLSINDDQDQNQEQQNILLSAARSSAGRTSTARSSPAVFFPKSPLPNDIITSQISHPSPSFSRLLCMNSPEWKQGLIGTFSAIAFGSIQPIYALTIGGMISAFFATSHQEMKHRIMNYSLIFTSLSLASIILNLLQHYNFAYMGAKLTKRVRLCMLEKILTFETAWFDEEKNSGGALCSRLSNEASMVKSLVADRVCLLVQTASAVTIAMIIGLVVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVKAQNQSTQIAVEAVYNHRIVTSFGSIEKVLRLFDEAQEAPRMEARKKSWLAGIGMGSAQCLTFMCWALDFWYGGRLVEKREISSGDVFKTFFVLVSTGKVIAEAGSMTSDLAKSSTAVASVFEILDRQSLIPKDGEDTNGIMLEKLSGKIELKNVDFCYPSRAKTPILNKFCLEVKPGKSVGLVGKSGCGKSTVIALIQRFYDVERGSVKIDDVDLRELDIHWYRQQTALVSQEPVIYSGSIKDNILFGKQDANENEVVEAARSANAHDFISSLKDGYETECGERGVQLSGGQKQRLAIARAIIRNPIILLLDEATSALDVQSEQVVQEALDRIMVGRTTIVVAHRLNTIKELDSIAYVLEGKVVEQGSYSQLKHKRGAFFNLANHQIQT 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04145 1238 CDD ABC_6TM_Pgp_ABCB1_D2_like 665 979 - -
Trre3g04145 1238 ProSitePatterns ABC transporters family signature. 1137 1151 IPR017871 GO:0005524|GO:0016887
Trre3g04145 1238 Pfam ABC transporter 1017 1165 IPR003439 GO:0005524
Trre3g04145 1238 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 359 595 IPR003439 GO:0005524
Trre3g04145 1238 CDD ABC_MTABC3_MDL1_MDL2 998 1235 - -
Trre3g04145 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 597 IPR027417 -
Trre3g04145 1238 PANTHER ABC TRANSPORTER B FAMILY 5 686 IPR039421 -
Trre3g04145 1238 FunFam ABC multidrug transporter SitT 989 1236 - -
Trre3g04145 1238 Pfam ABC transporter transmembrane region 674 944 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g04145 1238 Pfam ABC transporter transmembrane region 34 290 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g04145 1238 Pfam ABC transporter 379 526 IPR003439 GO:0005524
Trre3g04145 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 987 1235 IPR027417 -
Trre3g04145 1238 Gene3D - 988 1238 IPR027417 -
Trre3g04145 1238 FunFam ABC transporter B family member 1 20 352 - -
Trre3g04145 1238 SUPERFAMILY ABC transporter transmembrane region 21 342 IPR036640 GO:0005524|GO:0016020
Trre3g04145 1238 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 998 1234 IPR003439 GO:0005524
Trre3g04145 1238 Gene3D ABC transporter type 1, transmembrane domain 644 983 IPR036640 GO:0005524|GO:0016020
Trre3g04145 1238 Gene3D - 349 598 IPR027417 -
Trre3g04145 1238 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 674 961 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g04145 1238 SUPERFAMILY ABC transporter transmembrane region 661 975 IPR036640 GO:0005524|GO:0016020
Trre3g04145 1238 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 34 323 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g04145 1238 CDD ABC_6TM_Pgp_ABCB1_D1_like 33 331 - -
Trre3g04145 1238 Gene3D ABC transporter type 1, transmembrane domain 21 612 IPR036640 GO:0005524|GO:0016020
Trre3g04145 1238 FunFam ABC transporter B family member 4 349 607 - -
Trre3g04145 1238 ProSitePatterns ABC transporters family signature. 498 512 IPR017871 GO:0005524|GO:0016887
Trre3g04145 1238 SMART AAA_5 386 572 IPR003593 GO:0016887
Trre3g04145 1238 SMART AAA_5 1025 1214 IPR003593 GO:0016887
Trre3g04145 1238 FunFam Putative ABC transporter B family member 8 643 983 - -
Trre3g04145 1238 CDD ABC_MTABC3_MDL1_MDL2 361 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04145 Trre-Chr3 53167407 53181014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04145 2 1235 Calmodulin-binding Proteins AT2G36910 42.226 0.0 945
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04145 K05658 - gmx:100801088 2013.81