Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04134 ATGGTTGATGCTAATACTTCATCCTTTTCATCTTCACCTTCATCTTCACCACCACAACAATCAATGACATGTTCAAGTGAAGAAGAAAAAAAAGGAAAAAAAAGAGAAAGAGAAAACAACAATAACAACAACACTAACACTAAACATCCAGTTTATAGAGGAGTTAGAATGAGAAGTTGGGGAAAATGGGTATCCGAAATCCGAGAACCTCGGAAAAAAAACCGAATCTGGCTTGGAACATTCGCAACAGCCGAAATGGCAGCGCGTGCACACGACGCAGCTGCACTTACTATAAAAGGAAAATCAGCAATCCTTAACTTCCCCGAACTATCAGCATCACTTCCCAGACCGGTTTCCAGCTCACCAAGAGATGTTCAAGCCGCAGCCGCCAAAGCCGCTTCCATGGTTGCTCCACCACTCTCACCAGCAACATCATCTTCATCATCATCTTCATCTTCTTTTATCTCCTCGACACCCGAAGATCTCGAGGAGATTGTTGAGTTACCAACACTTGGACCCGACCCGGATAGTGAGTATTTGTTTTTTGACCCGGTTGATTATTCTCATTTGTGGTATCAAAGCATTTATGATGATGATGAAGAGAATGGTTACTTGAACATGATATCAATGCATGACCCAGAAAACACGCTACTTTCATTGTGGTCTTGA 669 0.423 MVDANTSSFSSSPSSSPPQQSMTCSSEEEKKGKKRERENNNNNNTNTKHPVYRGVRMRSWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDAAALTIKGKSAILNFPELSASLPRPVSSSPRDVQAAAAKAASMVAPPLSPATSSSSSSSSSFISSTPEDLEEIVELPTLGPDPDSEYLFFDPVDYSHLWYQSIYDDDEENGYLNMISMHDPENTLLSLWS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04134 222 CDD AP2 52 110 IPR001471 GO:0003700|GO:0006355
Trre3g04134 222 FunFam Ethylene-responsive transcription factor 2 50 109 - -
Trre3g04134 222 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Trre3g04134 222 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Trre3g04134 222 MobiDBLite consensus disorder prediction 1 49 - -
Trre3g04134 222 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700|GO:0006355
Trre3g04134 222 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Trre3g04134 222 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Trre3g04134 222 SUPERFAMILY DNA-binding domain 51 108 IPR016177 GO:0003677
Trre3g04134 222 MobiDBLite consensus disorder prediction 26 42 - -
Trre3g04134 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 30 174 - -
Trre3g04134 222 MobiDBLite consensus disorder prediction 1 25 - -
Trre3g04134 222 Pfam AP2 domain 50 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04134 Trre-Chr3 52996584 52997252 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04134 13 198 AP2-EREBP Transcription Factor Family AT5G11590 49.519 6.95e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre3g04134 AP2 5.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04134 K09286 - gmx:100804801 211.46