Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04133 ATGGTTAATGATAATACTTCATCACTCTCTTCAACTTCATCACCACCACAATCATTAACTTGTTCAAGTGAAGAAGAAGAAAAGAGAGGGAAAAAGAGAGAAAATAACTCGGTTTATAGAGGAGTTAGAATGCGCACATGGGGAAAATGGGTATCTGAAATCCGAGAGCCGCGGAAGAAAAGTCGAATTTGGCTTGGAACATTTGCAACGGCCGAAATGGCAGCGCGTGCACATGACGTGGCTGCACTTACCATTAAAGGCGCTGCCGCAATCCTTAACTTCCCCGAACTTGCAACTTCACTTCCTCGACCGGCTTCTAGTTCGCCAAGAGATGTTCAAGCTGCAGCCGCTAAAGCAGCTTCCATGATTGCCCCGCCACAATCACCGGCGCCTTCTTCTTCATTTTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCTTCTTCCTCAACGCTAGATGATCTGAGCGAGATTATTGAACTACCACAACTTGGAACATGTTTTGACTCGTCCAACCCGAATATCGAGTTTGTTTTTTTCGACCCGGTTGATTCTTCTCACTCATGGCATCATTACATTTTTTATGATGAAGAAGAGAATGGTTATGGTAATGGATGCAACTTCAACTTGGAATCATTGTGGCCTTGA 648 0.4414 MVNDNTSSLSSTSSPPQSLTCSSEEEEKRGKKRENNSVYRGVRMRTWGKWVSEIREPRKKSRIWLGTFATAEMAARAHDVAALTIKGAAAILNFPELATSLPRPASSSPRDVQAAAAKAASMIAPPQSPAPSSSFSSSSSSSSSSSSSSSTLDDLSEIIELPQLGTCFDSSNPNIEFVFFDPVDSSHSWHHYIFYDEEENGYGNGCNFNLESLWP 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04133 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 167 - -
Trre3g04133 215 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Trre3g04133 215 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Trre3g04133 215 CDD AP2 37 97 IPR001471 GO:0003700|GO:0006355
Trre3g04133 215 Pfam AP2 domain 37 87 IPR001471 GO:0003700|GO:0006355
Trre3g04133 215 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Trre3g04133 215 MobiDBLite consensus disorder prediction 22 38 - -
Trre3g04133 215 FunFam Ethylene-responsive transcription factor 2 37 96 - -
Trre3g04133 215 MobiDBLite consensus disorder prediction 1 21 - -
Trre3g04133 215 Gene3D AP2/ERF domain 38 96 IPR036955 GO:0003700|GO:0006355
Trre3g04133 215 MobiDBLite consensus disorder prediction 1 38 - -
Trre3g04133 215 MobiDBLite consensus disorder prediction 102 149 - -
Trre3g04133 215 MobiDBLite consensus disorder prediction 126 149 - -
Trre3g04133 215 SUPERFAMILY DNA-binding domain 37 96 IPR016177 GO:0003677
Trre3g04133 215 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04133 Trre-Chr3 52967734 52968381 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04133 3 210 AP2-EREBP Transcription Factor Family AT5G11590 53.604 5.72e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre3g04133 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04133 K09286 - gmx:100804801 206.068