Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04132 ATGGTTAATGCTAATACTTCACCACCTTCTTCACCTTCATCACATTCACCACCACAATCATTGATCACTTGTTCAAGTGAAGATGAAAAGAGAGGCAAAAAAAGAGATAATAGTAACAACACTCACCATCCAGTTTATAGAGGAGTTAGAAAGCGCAATTGGGGAAAATGGGTGTCTGAAATCCAAGAGCCGCGGAAGAAAAGCCGAATTTGGCTCGGCACATTTGCAACCGCCGAAATGGCAGCACGTGCACACGACGCAGCTGCACTTACCATTAAAGGCTCTGCCGCATTCCTTAACTTCCCCGAACTCGCAGCTACACTTCCTCGACCGGCTTCCAGTTCGCCAAGAGATGTTCAAGCCGCAGCTGCTAAAGCCGCTTCCATGGTTGTTCCGCCACAATCAACAGCACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGACGCCAGATGATCTGGGCGAGATTATTGAACTACCGCAACTAGGAACATGTTTTGAGTCACCTGACCCGAATAATGAGTTTGTGTTTTTCGACCCGGTTGATTATTTTGATCCTTCATGGTATCATAAAATTTATGTTAATGATGAAGATGGTAGCGAATGCAACTTCAATATGCTATCAATACATGACCTATGA 906 0.4106 MVNANTSPPSSPSSHSPPQSLITCSSEDEKRGKKRDNSNNTHHPVYRGVRKRNWGKWVSEIQEPRKKSRIWLGTFATAEMAARAHDAAALTIKGSAAFLNFPELAATLPRPASSSPRDVQAAAAKAASMVVPPQSTAPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTPDDLGEIIELPQLGTCFESPDPNNEFVFFDPVDYFDPSWYHKIYVNDEDGSECNFNMLSIHDL 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04132 301 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Trre3g04132 301 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Trre3g04132 301 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Trre3g04132 301 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Trre3g04132 301 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Trre3g04132 301 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Trre3g04132 301 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 26 211 - -
Trre3g04132 301 MobiDBLite consensus disorder prediction 132 241 - -
Trre3g04132 301 MobiDBLite consensus disorder prediction 1 56 - -
Trre3g04132 301 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Trre3g04132 301 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Trre3g04132 301 MobiDBLite consensus disorder prediction 108 243 - -
Trre3g04132 301 MobiDBLite consensus disorder prediction 26 41 - -
Trre3g04132 301 MobiDBLite consensus disorder prediction 1 25 - -
Trre3g04132 301 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04132 Trre-Chr3 52914671 52915576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04132 240 277 AP2-EREBP Transcription Factor Family AT5G11590 50.000 2.58e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre3g04132 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04132 K09286 - gmx:100804801 166.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g04132 3 52914671 52915576 Trre3g04132 3 52914671 52915576 ECH