Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04117 ATGGTATCTCAAGGTACCAATTTGATCCTATGGCGTTTTGTTTTGGTCATTGTGATTGTAATTTTTTTCACTCCAGACCTTAGTTTTGCCAAACAATCCAAGTTAATGGGCTTGAAAATGAATATGATTGATAGTTGTTGGAGACCAAATCCTGAATGGAGGAGGCACAGAACACAACTATCAACTTGCTCTGTAGGCTATGTTGGAAAGATGACAGACAACATCGGTAATGACCTCATACATTATAAAGTTACAGACCCAAATGATGATCCTATAACTCCCAAACCTGGTACATTGAGATATGGAGCTTCTGTAATTCAAGATAAAGTGTGGATCACATTCCAAAACAATATGAATATTAGACTCATGAAACCTCTTCTCATTAGTAGTTTCACTACCATTGATGGTCGCGGAGTCAATGTCCACATTGCTAATAATGCATGTTTGATGATATTCAAGGCCACCAACATAATCATTCATAGCATTCGAGTCCATCATTGCAAAGCTCAAGCACCGGGAATGGTCATGGGGCCTAATGGAAAGGTAATTCATTTGGGTCAAGTAGATGGAGATGCAATTAGATTGGTTACAGCTTCAAAAATTTGGATTGATCATAATACACTTTATGAATGTGAAGATGGTCTTCTTGATGTCACAAGAGGTTCTACTAATGTCACTATATCCAATAATTGGTTTAGAGAACAAGATAAGGTTATGCTTCTTGGTCATGAGATGATGGGTATGTGA 747 0.3748 MVSQGTNLILWRFVLVIVIVIFFTPDLSFAKQSKLMGLKMNMIDSCWRPNPEWRRHRTQLSTCSVGYVGKMTDNIGNDLIHYKVTDPNDDPITPKPGTLRYGASVIQDKVWITFQNNMNIRLMKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHSIRVHHCKAQAPGMVMGPNGKVIHLGQVDGDAIRLVTASKIWIDHNTLYECEDGLLDVTRGSTNVTISNNWFREQDKVMLLGHEMMGM 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04117 248 Gene3D - 40 247 IPR012334 -
Trre3g04117 248 Pfam Pectate lyase 127 243 IPR002022 -
Trre3g04117 248 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Trre3g04117 248 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Trre3g04117 248 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Trre3g04117 248 SMART amb_all 117 247 IPR002022 -
Trre3g04117 248 SUPERFAMILY Pectin lyase-like 27 247 IPR011050 -
Trre3g04117 248 PANTHER PECTATE LYASE 18-RELATED 37 244 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04117 Trre-Chr3 52842017 52842970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04117 71 244 Polysaccharide Lyase AT5G09280 67.816 8.77e-91 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04117 K01728 - gmx:100780437 400.979