Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04116 ATGCCCAGGATTCGCCATGGATATGCACATGTAGCCAACAATCTTTACTTAGGGTGGATGCAATATGCTATTGGTGGAAGTATGGGGCCTAGTCTCAAAAGCGAGGCTAACCTCTTCATAGCACCAAAAGTTGGGAGTAAAGAGGTAACATGGAGAAAAATTGGTAATTCAAGCGGAGACAAATGGGAATTTCATTCCGTACGGGACGCATTTGAAAATGGAGCTTCCTTCGCGGTAACAAAAGGAGGACGTGTGCCAAAGCCAAATTATAGCAAAGATCAAAGTTTTGAAGTTGTTGATGTTAAATCTGTTAGATCATTGACAACATCATCAGGCGCATTTCAATGCAGTAGAACATCTATATGCTGA 369 0.4173 MPRIRHGYAHVANNLYLGWMQYAIGGSMGPSLKSEANLFIAPKVGSKEVTWRKIGNSSGDKWEFHSVRDAFENGASFAVTKGGRVPKPNYSKDQSFEVVDVKSVRSLTTSSGAFQCSRTSIC 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04116 122 PANTHER PECTATE LYASE 18-RELATED 1 118 IPR045032 GO:0030570
Trre3g04116 122 SUPERFAMILY Pectin lyase-like 1 91 IPR011050 -
Trre3g04116 122 Gene3D - 1 115 IPR012334 -
Trre3g04116 122 PRINTS Pollen allergen Amb family signature 22 41 IPR018082 -
Trre3g04116 122 PRINTS Pollen allergen Amb family signature 93 116 IPR018082 -
Trre3g04116 122 PRINTS Pollen allergen Amb family signature 62 86 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04116 Trre-Chr3 52841359 52841954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04116 1 122 Polysaccharide Lyase AT1G30350 44.715 9.58e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04116 K01728 - gmx:100780437 213.001