Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04111 ATGATGAATCAACTTGGTATTAACCTTTTGATTCTCTCAATCTTTTTCTTCTATCATGTTAGAGCACAAACACAAAGTACTCCATCTTCACAAGATGTTGTCTCAAATTTCCAACCAAGTCTTGTTGTTGTCATAGGAATTCTTGGTCTCATGTTTTCATTAACATTTATTCTTCTTATTTTTGCCAAAGTGTGTCATAGGAGACAATTACTTCCTCTAAGTGATGATCAAAATAATCAATTTCCAACACTCATGAGATCAAGGTCAAGATTTTCAGGAATTGACAAAACTGCAATAGAATCACTTCCATTCTTCAAATTCTCATCTCTTAAAGGTTCAAAAGAAGGTTTGGAATGTTCAATATGTTTGTCAAAGTTTGAAGACATAGAAATTTTAAGATTATTACCAAAATGTAAACATGCTTTTCATATTGATTGTATTGATCATTGGCTTGAAAAACATTCAAGTTGTCCTATTTGTAGACACAAAGTCAACATTGAAGATCAAACAACTTTTGCATATTCAAATAGTTTAAGGATGTTGGTAAGTGAAGAATCAAACATAGATATTTTTGTCCAAAGAGAAGAAGAAAATGATCAACATGGTTCATCAAGATTTAGTATTGGAAGCAGCTTTAGAAAATTTGGAAAAGGAAATACTAAAGAAGAAGAATTGCTTATACAAAAAGGAACAAAAGAAGAAAGTGACTTAATTGAACACAATCACACGTGTCAATGTCGTATTGATACAGGACATGCCATCAATCAGAAGTGTCAGTGCTACAGAGCTTATCACAAACACAATCATCAGATTACTATATCTGATGTTGTGTTTAAGCATAGATGGAGCAATGTTAGTTCTTCTGATCTTATGTTTTTGAATTCAGAGATGATTAATGCTACATCAAGTAATAGGTTCAACAACATGGAATCAAAAATTTCATTTGAGAACAAAGTTAGTGGAAATTTTAGTCATGCAGAAAAATATGTGAATAATCATCATGATGGTGAGAAAAGATCAGTGTCAGAAATCACAGCTGTTTCTAGATTTAGAGATTTAGATATGAAGAAAAGGGTGATTGAAGATTCTTCTTTGGTTGAAAATAAGCTTAGAGAAGAAAAATCGAGGAAGCTTTGGTTTCCAATTATGTATAATCCATTCTTCACCTTCCTAAGGATCATAAAAAGCTTCAAAACTCAGAGATGGCTCACACCGGCGGCATCAAGATTAAAACGCAGGCCTTTGTAG 1248 0.3237 MMNQLGINLLILSIFFFYHVRAQTQSTPSSQDVVSNFQPSLVVVIGILGLMFSLTFILLIFAKVCHRRQLLPLSDDQNNQFPTLMRSRSRFSGIDKTAIESLPFFKFSSLKGSKEGLECSICLSKFEDIEILRLLPKCKHAFHIDCIDHWLEKHSSCPICRHKVNIEDQTTFAYSNSLRMLVSEESNIDIFVQREEENDQHGSSRFSIGSSFRKFGKGNTKEEELLIQKGTKEESDLIEHNHTCQCRIDTGHAINQKCQCYRAYHKHNHQITISDVVFKHRWSNVSSSDLMFLNSEMINATSSNRFNNMESKISFENKVSGNFSHAEKYVNNHHDGEKRSVSEITAVSRFRDLDMKKRVIEDSSLVENKLREEKSRKLWFPIMYNPFFTFLRIIKSFKTQRWLTPAASRLKRRPL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04111 415 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Trre3g04111 415 CDD RING-H2_EL5-like 118 161 - -
Trre3g04111 415 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 382 - -
Trre3g04111 415 SMART ring_2 119 160 IPR001841 -
Trre3g04111 415 SUPERFAMILY RING/U-box 98 167 - -
Trre3g04111 415 Pfam Ring finger domain 118 161 IPR001841 -
Trre3g04111 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 170 IPR013083 -
Trre3g04111 415 FunFam RING-H2 finger protein ATL43 94 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04111 Trre-Chr3 52742538 52743949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04111 14 382 C3H Transcription Factor Family AT4G28890 42.523 8.30e-93 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04111 K10664 - gmx:100803207 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g04111 3 52742538 52743949 Trre3g04111 3 52742538 52743949 ECH