Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04089 ATGGAAAGTTCTGAGAAATTTTCTCAAAGAAATAGTAACAATGGCTTGAACCTTAAGGCTACTAAGTTAAGACTTGGTTTACCAGGTTCTGAATCACCAGAGAGAGATGATGATGATGCTTTTGAGGACAAAAATGTATACCCTTTATGCATGCTTAAGAGTTTAGTTTCAGGGGCAAAAAGGGGTTTTTCAGATTCCATTGATGTTGGTTCTAGTAAATGGATTCTTTCTGGAAATGGTGGATCTGAAATTGGTATGAGTAAAGATTGTACAATTCAACAAGGTTCTGTTTTGAAAGAGAAAATTGAACAGTCTTCAAATCCTTTGAATGAGAAGAAGAAATCTCAGATAATTTCTTCAGCTGCAAAGGAACAGGTTGTAGGATGGCCACCAATCAGATCTTTCAGGAAGAATTCAATGGCTTCTCAGTCTCAAAAGAATGATGATGATCATGATGATGATGATGAAGTAGAAGCTAAATCTGGATGCCTTTATGTAAAAGTGAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGACCTCAAAATTTTTGGCACTTACAAGGAATTATCTTCTGCATTAGAAAAGATGTTTAGTTGTTTTACACTAAGTCAATTTGGCTCTCATGGAGTTTCTGGTCAAGATAATTTGTGTGAAAGTAGATTGATGGATCTTCTTCATGGTTCAGAATATGTCCTTACCTATGAAGACAAAGATGGGGATTGGATGCTAGTTGGTGATGTTCCATGGAAGATGTTTACCGACTCTTGCAAGAGGTTAAGGATAATGAAAAGCTCTGAAGCAATTGGATTAGCACCAAGAGCCATGGAGAAGTGCAAAAGTCGCAACTAG 852 0.3732 MESSEKFSQRNSNNGLNLKATKLRLGLPGSESPERDDDDAFEDKNVYPLCMLKSLVSGAKRGFSDSIDVGSSKWILSGNGGSEIGMSKDCTIQQGSVLKEKIEQSSNPLNEKKKSQIISSAAKEQVVGWPPIRSFRKNSMASQSQKNDDDHDDDDEVEAKSGCLYVKVSMDGAPYLRKVDLKIFGTYKELSSALEKMFSCFTLSQFGSHGVSGQDNLCESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWKMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04089 283 ProSiteProfiles PB1 domain profile. 163 265 IPR000270 GO:0005515
Trre3g04089 283 Pfam AUX/IAA family 21 274 IPR033389 -
Trre3g04089 283 FunFam Auxin-responsive protein 158 275 - -
Trre3g04089 283 SUPERFAMILY CAD & PB1 domains 161 264 - -
Trre3g04089 283 MobiDBLite consensus disorder prediction 103 122 - -
Trre3g04089 283 MobiDBLite consensus disorder prediction 137 156 - -
Trre3g04089 283 MobiDBLite consensus disorder prediction 1 41 - -
Trre3g04089 283 MobiDBLite consensus disorder prediction 1 19 - -
Trre3g04089 283 Gene3D - 157 277 - -
Trre3g04089 283 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 270 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04089 Trre-Chr3 52543589 52547007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04089 139 273 B3 DNA Binding Superfamily AT4G23980 28.986 2.97e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre3g04089 AUX_IAA 3.1e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04089 K14484 - gmx:100803754 408.297