Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04088 ATGAATAGAGGTGTTGTGCAAAGCTCACCAGTGCAACAAATGATGGCTAGTAACCCTAATTGGTGGAATATCAATATCAATAACATGAGGCCTCCATCTCCACAACCTCCTCCTTTCTTTTCTTCTCCTTCTAACTTTCTCATCCCTAATTATACCCCAAATTCTTCTTCTTCTCTTCCTTTTCCTTCTTGGAATGACAATCATCAAGAGCTTCCTGAATCATGGAGCCAACTACTCATGAGTGGAATTGTGGGTGAGGAAGATAGGATTGGTATGAGCCAATTTCAAAATCAAATGCTAATAAGTCAAGCTCCAAATGCTTCTCTTGTTGAAGTTAAACAAGAAAGCTCAGGAAATAGCTATGCATATGGACATGGAAATGAAGAACTTAATTCATGTGTGACAAGTTTCAACTCCAATAACATGTTGGATTTTTCCAACAATAATATAGAAGTGAGGCATCCACCACCAGATCGATCTTCTGAGTGCAACAGCAGTGCATCCGGTGGGGCTATGAAGAAAGCTAGGGTTCAACAAGCTACAACTCAAACTACCTTCAAGGTTAGGAAGGAGAAGTTAGGTGATAGAATTACTGCCCTTCATCAGCTTGTTTCTCCATTTGGAAAGACTGACACGGCCTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTTCAGAGTCAAATTGAGGCTCTTAGCTTACCATACTTGAACAATGGACCAGGAAACACAAGGCAACAACATTCAGTTCAAGGAGAGAAGAATTGTTTATTCCCTGAAGACCCTGGTCAGCTGGTAAATGAAAATAGCTTGAAGAGGAAAGCTGTTGAAGAGGTTTCTCAACAAGAACCAAAGAAGGACCTAAAGAGCAGAGGGCTATGTCTTGTTCCAGTTTCATGCACACTACAAGTTGGGAGTGACAATGGAGCTGATTATTGGGCACCTACCCTTGGAGGAGGCTTTCCATAA 972 0.4115 MNRGVVQSSPVQQMMASNPNWWNININNMRPPSPQPPPFFSSPSNFLIPNYTPNSSSSLPFPSWNDNHQELPESWSQLLMSGIVGEEDRIGMSQFQNQMLISQAPNASLVEVKQESSGNSYAYGHGNEELNSCVTSFNSNNMLDFSNNNIEVRHPPPDRSSECNSSASGGAMKKARVQQATTQTTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLNNGPGNTRQQHSVQGEKNCLFPEDPGQLVNENSLKRKAVEEVSQQEPKKDLKSRGLCLVPVSCTLQVGSDNGADYWAPTLGGGFP 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04088 323 FunFam transcription factor bHLH68 isoform X1 184 237 - -
Trre3g04088 323 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 61 305 - -
Trre3g04088 323 MobiDBLite consensus disorder prediction 159 183 - -
Trre3g04088 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 226 IPR011598 GO:0046983
Trre3g04088 323 MobiDBLite consensus disorder prediction 153 183 - -
Trre3g04088 323 CDD bHLH_AtbHLH_like 185 234 IPR045239 -
Trre3g04088 323 Gene3D - 179 237 IPR036638 GO:0046983
Trre3g04088 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 237 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04088 Trre-Chr3 52482360 52488844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04088 1 266 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 42.407 7.32e-64 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04088 - - gmx:100786555 457.218