Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04071 ATGGATCCTCCAACAACAAGTTGGAGCATCCATACCCGACCCGAAATAACAACCAAATACGAAATCCTCAACCACATCGGATCCGGTTCCTACGCCGACGTCTACCGTGGCCGCCGTATCTCCGACGGAACAACAGTCGCACTGAAAGAAGTCCACGATCACCAATCAGCATCAAGAGAAATCGACGCTTTGAAAATTCTTCGGGGCTCCGAAAACGTTGTTTTCATGCATGAGTTTTTCTGGCGAGAAGATGAAGACGCCGTGATTGTTCTTGAGTTTCTGAGGACCGATCTCGCCGCCGTGATCAGAGGTGCCGGAAGTGAGAGGATTGATGGTGGTGAAGTCAAAGGGTTGATGATGCAGATGGTTAGTGGGGTCCACGCTTGTCATCAGAATAGGATTATTCATAGAGACTTGAAGCCGGAAAATTTCTTGATTTCCGATGATGGGGTTGTTAAATTGGCAGATTTTGGACAGGCAAGGATACTTATGGAGTCGAGATTTGATGCATCAAATCATGAAAGTTCACCACAACATCCTCATGATGCTATTCCCTTATCAGACAACTCAAACCAAACTGAATTTGAAAATCAAGACGAGGAGGAGGAGGAAAAAATGAGTCATGATGAATATTTTAGAGTGTTAGATGAGCTGAAAATTAAGAGCCACACATACGATACCGATGATAAGGACACAAACACACATGAAGGTAACAACTCGTGCCTTGCAACATGCACAACTAGCGATGACGATGATGATGCTTGGAAGAATTCTTTGCCGTATGAAGGAGACGAAGGAGGGAATGAAGAAAATGGTTTTCTCACATCATGTGTTGGAACTAGATGGTTTAGGGCTCCGGAACTACTTTATGGATCAACTAATTATGGTTTAGAGGTCGATCTTTGGTCATTAGGATGTGTTTTTGCCGAGTTGTTAACATTGAAGCCTTTGTTTCCTGGAACAGGTGATATTGATCAAATTAGTAGAATCATTAGTGTTTTGGGTGATCTTGATGAGGAAGCTTGGAATGGTTGTTCTAAACTTCCTGATTATGGAACAATTTCTTTTACTAAGGTGGAAAATCCTATTGGCCTTGAAGCATGCATGCCAAATTGTTTGCATGATGAAGTTTCCTTGGTGAAAAAATTGGTTTGTTATGATCCAGCTAGGAGAGTCACTGCAATGGAGTTACTTCATGACAAGTACTTCTCTGAAGAACCACTTCCAGTTTCTGTTTCTCAACTGCGGGTTCCTCCTATAGCCAGAAATGGACAAGACTAG 1281 0.427 MDPPTTSWSIHTRPEITTKYEILNHIGSGSYADVYRGRRISDGTTVALKEVHDHQSASREIDALKILRGSENVVFMHEFFWREDEDAVIVLEFLRTDLAAVIRGAGSERIDGGEVKGLMMQMVSGVHACHQNRIIHRDLKPENFLISDDGVVKLADFGQARILMESRFDASNHESSPQHPHDAIPLSDNSNQTEFENQDEEEEEKMSHDEYFRVLDELKIKSHTYDTDDKDTNTHEGNNSCLATCTTSDDDDDAWKNSLPYEGDEGGNEENGFLTSCVGTRWFRAPELLYGSTNYGLEVDLWSLGCVFAELLTLKPLFPGTGDIDQISRIISVLGDLDEEAWNGCSKLPDYGTISFTKVENPIGLEACMPNCLHDEVSLVKKLVCYDPARRVTAMELLHDKYFSEEPLPVSVSQLRVPPIARNGQD 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04071 426 ProSiteProfiles Protein kinase domain profile. 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04071 426 Pfam Protein kinase domain 20 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04071 426 Pfam Protein kinase domain 274 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04071 426 Gene3D Transferase(Phosphotransferase) domain 1 268 406 - -
Trre3g04071 426 FunFam Cyclin-dependent kinase F-1 11 105 - -
Trre3g04071 426 SUPERFAMILY Protein kinase-like (PK-like) 12 409 IPR011009 -
Trre3g04071 426 PANTHER CELL DIVISION PROTEIN KINASE 19 409 - -
Trre3g04071 426 SMART serkin_6 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04071 426 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Trre3g04071 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Trre3g04071 426 MobiDBLite consensus disorder prediction 170 207 - -
Trre3g04071 426 Gene3D Transferase(Phosphotransferase) domain 1 11 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04071 Trre-Chr3 52226426 52228490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04071 4 419 Core Cell Cycle Gene Families AT4G28980 61.663 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Trre3g04071 Pkinase 3.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04071 - - tpra:123883153 800.431