Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04065 ATGAACCAATTTTCGGGAGACTTGTCAATAGCCCTTGGAATATATCCTAACTTGAATTACATTGATCTAAGTCATAATAACTTTTCTGGCACACTATCATCTAACTGGGGACAATGTAAGACACTGACAAGCTTGAAGATCTCGAACAACAAAATTGGCGGGAGATTACCTGAAAACCTCGGAGAAGCTTCTGAAATTCATATGCTTGATCTTGGTTCTAATAAATTGTTTGGGGAAATTCCAATTTCTATCACAAATATGACTTCTTTATTCAATCTCAACTTAGAAGGCAACATGTTATCTGGAGTTATTCCGAAGGAAATTAGAATGCTCTCTGGCCTTTCTTCTCTCAACCTAGCATCGAACAATTTGAGTGGCGTAATTCCTCGAGATATTGGAGAGTGTAGAAACCTTCTGATATTGAATTTGAGTTTTAACTCTTTTGGTGCAAATATTCCCTCACAAATAGGAAATATACGCTCCCTTCAAAATCTCGATTTGAGTCATAATCGGTTGAGTGGTGAAGTTCCTCAAGAATTCGGGAAACTTGTTGTCTTAGAAAGTCTAGGGCTTTCTAACAATAACATATCAGGTCTTTTGCCATCTACTCTTGACAATTGTGTAAGTTTGACTTCAATAGATATATCGAACAACGAGTTAGAAGGTCCATTGCCTGATATTCTAGCTTTTCGAAATGCTACATCCGATTCAGTGAAGAATAATAAAGGTCTTTGCGGACATATTGATGGTTTAACTCCATGTTTTCCAAAAAATCAAAGGAAGAAAAAAAGCTCAAAAGCCGTGATGTTGATCGCAGTGTTCGCAGGAATCTTTGTTGTGATTGTCCTAGTTGGAATTTTTATGTGTGCCCGAAAATGGAATAAAAAAACTATGACAATTACGGAGCAGATTAATCCAATAGAAGATTTGCTTTCGATTTGGAGCTTTGATGGGAAAATGGTCTATGAGAATATAATTGAAGCAACCGGAGACTTCGATTCTGAATATTGCATCGGACAAGGAGGATACGGAAGTGTTTATAGGGCTGAGTTATCAACCGGTCAAGTTGTTGCCGTGAAAAGACTCCACAACTCAAAAGATTTTTTGAAGTCTAAAATAGAGAAAAGCTTCATATCTGAAATTCAAGCACTAACCGAATTGCGACAACGTCACATTGTGAGGCTACTTGGATTTTGTTCACATGTTAGGAACTCATTTTTGGTTTATCAGTTTGTGGATGGAAGCAACCTTCAAAATATGTTGATGAATCATGAACAAGTTCAAAACTTCAAATGGATTAATAGATTCAATGTTGTTAAAGGAGTAGCAGATGCATTATCCTACATGCATCATGAAATATCACCTCCCTTGGTTCATAGAGACATATCAAGCAAGAATATCTTGTTAGATGAAAATTTTGAAGCTCATGTAACAGACTTTGGCACTGCAAGATTCTTGAGTCACAATTCATCTTATCAGACTTCATTTGCCGGAACATTCGGATACACAGCTCCAGAACTTGCTTATACTCGAGAGGTAAGCGAGAAATGTGACGTGTACAGTTTCGGGATGCTAGCATTAGAAGTGGTGATGGGGATGCATCCAGGTGATCTAATCTTATCGATATTATCGTCGTCCGATCCTTCTTTGACGACGATTTCGCTAAAAGATGTAATTGATCAACGTGTTTCACCTCCTGTGATGGATGAGATAGAGAAGGTAACTCTCATTACAAAGTTGGCATTTGCTTGTCTGCAACAAAATCCTCAATCTCGACCGACAATGCATGATGTTTCTAATCAATTAGCAAAATTGAAGCCAAACAATGCAGCAAGGGTTGAGTTTTCATCCATCAAAATTGGCGAACTGCATGCAATCGGATGTTCCATGTTTAGAACAGATTATCATCCTATAAGTAACATCCAAACAAATGGTCTGAATCCAAGTGTTGTGAGTGCTGATAGCTCACCACGGTCGACTGTGAACTCGACCATGCAGGCTCCTCGAAAAAATGGGATTCGCAATGATGTTTGCGATGAAGCTCGTTTAAATATCTCGCCTTCACTTCCCTCTCCTAATGCTAGATGTTTGGAGCAAGAGAGGCCAACGACATCTGGAAGTGAGGTCCAAATCAATAGCTCAAAGCTCATTTCTGGTGCTGAGGAGATTTTGACCCTCTTAAAAGAATCTTGGAGAAGGCTGCGATGGAGAAGCTACATGTATCGGATGAGCTTGAAGATTCACCTTAAGGTGCTTCAAGAAGACGGTAAAATTATTTCTTCTAAAGCTACCAGGCGCAGGACAATGGACAAGTCTTCCAGTTTCATCATTCATACTCGTATTTAA 2346 0.3875 MNQFSGDLSIALGIYPNLNYIDLSHNNFSGTLSSNWGQCKTLTSLKISNNKIGGRLPENLGEASEIHMLDLGSNKLFGEIPISITNMTSLFNLNLEGNMLSGVIPKEIRMLSGLSSLNLASNNLSGVIPRDIGECRNLLILNLSFNSFGANIPSQIGNIRSLQNLDLSHNRLSGEVPQEFGKLVVLESLGLSNNNISGLLPSTLDNCVSLTSIDISNNELEGPLPDILAFRNATSDSVKNNKGLCGHIDGLTPCFPKNQRKKKSSKAVMLIAVFAGIFVVIVLVGIFMCARKWNKKTMTITEQINPIEDLLSIWSFDGKMVYENIIEATGDFDSEYCIGQGGYGSVYRAELSTGQVVAVKRLHNSKDFLKSKIEKSFISEIQALTELRQRHIVRLLGFCSHVRNSFLVYQFVDGSNLQNMLMNHEQVQNFKWINRFNVVKGVADALSYMHHEISPPLVHRDISSKNILLDENFEAHVTDFGTARFLSHNSSYQTSFAGTFGYTAPELAYTREVSEKCDVYSFGMLALEVVMGMHPGDLILSILSSSDPSLTTISLKDVIDQRVSPPVMDEIEKVTLITKLAFACLQQNPQSRPTMHDVSNQLAKLKPNNAARVEFSSIKIGELHAIGCSMFRTDYHPISNIQTNGLNPSVVSADSSPRSTVNSTMQAPRKNGIRNDVCDEARLNISPSLPSPNARCLEQERPTTSGSEVQINSSKLISGAEEILTLLKESWRRLRWRSYMYRMSLKIHLKVLQEDGKIISSKATRRRTMDKSSSFIIHTRI 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04065 781 Pfam Protein kinase domain 337 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04065 781 SUPERFAMILY L domain-like 2 246 - -
Trre3g04065 781 SUPERFAMILY Protein kinase-like (PK-like) 314 602 IPR011009 -
Trre3g04065 781 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Trre3g04065 781 ProSiteProfiles Protein kinase domain profile. 332 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04065 781 Gene3D Phosphorylase Kinase; domain 1 294 411 - -
Trre3g04065 781 FunFam Leucine-rich repeat receptor protein kinase EMS1 8 107 - -
Trre3g04065 781 SMART LRR_typ_2 159 182 IPR003591 -
Trre3g04065 781 SMART LRR_typ_2 183 206 IPR003591 -
Trre3g04065 781 SMART LRR_typ_2 111 135 IPR003591 -
Trre3g04065 781 PANTHER LEUCINE RICH REPEAT KINASE 2 2 611 - -
Trre3g04065 781 Gene3D Ribonuclease Inhibitor 1 258 IPR032675 -
Trre3g04065 781 FunFam MDIS1-interacting receptor like kinase 2 412 608 - -
Trre3g04065 781 Gene3D Transferase(Phosphotransferase) domain 1 413 621 - -
Trre3g04065 781 ProSitePatterns Tyrosine protein kinases specific active-site signature. 457 469 IPR008266 GO:0004672|GO:0006468
Trre3g04065 781 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 129 254 - -
Trre3g04065 781 FunFam Leucine-rich repeat receptor protein kinase MSP1 294 411 - -
Trre3g04065 781 PRINTS Leucine-rich repeat signature 18 31 - -
Trre3g04065 781 PRINTS Leucine-rich repeat signature 159 172 - -
Trre3g04065 781 Pfam Leucine Rich repeat 38 54 IPR001611 GO:0005515
Trre3g04065 781 Pfam Leucine rich repeat 160 220 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04065 Trre-Chr3 52186491 52189845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04065 2 505 Receptor kinase-like Gene Family AT4G08850 45.508 6.08e-146 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre3g04065 Pkinase 5.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04065 - - tpra:123884323 1035.4