Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04059 ATGTATAAACCATTTGTGACATGTGATGATCCTAGAGGAGTTGTTGAGTGTGGAAGTATAAGAAGGTATAAGTCAAATTCTAACAAAATGAAGGACAAGACAAAGAGTCGAAAGACGGCCGAAAATATAGAGACAAACAAACAAGACAAAGAAGAGAAAATGTCATCAAAAGGTTCGACCGAAAGAGGTTTTGATCCATCTTCTTTGCAGCTTGTGAAGGTGTCTAGAGGTGCCGAGAAGTTGAATAACATGATTGAGTCGTGGTCTAGAGGTTTGAGGTACGATGGAAGATCCGAAGATATTGCAAAGGATTTGTTAAAAGGGGCTCTTGATTTGCAAGAATCTCTTGAGATGCTTCAAAAGGTGCAAGAAGTTTCGAATAATATGGCTCGATCGAAGAAGAAACAAGACGAGGAACGTGAAAGAAGTAGAATTGATGCTAAGGTGAATGATGGAATTAGATCAACACATTCCAATCGTTTTGTCGAACACAATTCCGCTTATGGTTCTTCGAGTAGTTGTAGAGAGGAACTTAAGAATGTGATTAAGGAGAGTTTGGTTAGACAGAATCTATTCCAAAGCACAAGCACTTCTGAAGGATTGGATTCAGCTTCAGCAGCATTTCCTTCTACAAGCTCAAGTCAATCTTCTGTTGTTTGGTATGACAAACTTTCGGATTCTTCCTCGTCACCGAATTTTCCAAGGAAGGAAAAAAGATCCAATCTTGTTGCAAAGTTGATGGGATTAGAACAAGTCCCTTCAAGAACATTTCCATCTGTTATGCAAAAACAGTTGGAGAATCAAAAGATTGTGAATCAAAAGAGACCTGTATTCGAGATTGACACGCCGAAGACAAGAAAGAATAGTTTATTTGTCGAGAGGGCTAATATGGAGAAACAAAAGACTTTGAGGGAAATTCTTGAAACTACTCATTACAATGGATTGTTGAAGAATAGTCCTATTAGAGAGCACAAGCTTTATAATCATGTTCATCATTCAGATGATCTTCATAACCAAAAGTTTGATGATTTACCGCCGATTGTGCTCATGAAACCTCGGCGCGGTACATATCAAGAATTTGTAGAAACTTATGAGCCAGTTCGTCAGGAAGATTTCTCGTTTAGAAATCTAAAAGAGAAAACAGTCTCTTCAAAAACCTTCAAGCCTAGGGAAGGTTCGACTACAAATATGAGAAAAGACATGGAAGAAAATCTATCCAAAAGGATTATCAAAGAGGAAAGACCGAAGCGTGTCAAAGAGGTTGTGGAATTTGATGTGAAAGAAATCAAACCGGTCGAAAACAAGAAGGTTCAAAAAGCTAGTCACAGATTACAGGCAAGTGAAAAAGTCGATGAAAAAGTTAAGGTAAAGAATATTAATATCAGCAGAAAGCCGCTAGAGAAGGATGTTTCAAAAGCTAAAGTTGTAACGAAAGCTCAAGATCAAGGAGAAATCAGGTCTAGTAGTGAAAAGTTAAGGAAGCCGAGAAGTGTGTCGAGGATTGAGAAGAATGAGATTCCATACAAAAAAGGAACTGCTTCAAATTCAAATATCATCACAAAACCAAAGACACAAAAAGTTAATAACTCAAAGGAATTAAGAAAAAGTCCGATGAAGAAGCAAAGGTCTGTCGATGAGGCTGAAGCAGCTAAACCACTTGATGACCAATTAAGGGAAGAAGACGGAATGAGTATGAATGTTTCATGTAAAGATGAGTGTACTGAGATTAAAATAATCACTACAATAACAGAAGATCTCATCACGGAGCATGAAGAAGTAGACACCAATAAGACTAAAGATAATTGTGATTCGTACCGTCATAATTCTTCAAGTCATGATGTTTTGATGATAAATTGTGAACATGAAAATGATACCATCTCAGCCGAGGAAGCTCTTGACATCACCAGCATCAGTGAAACTGGTTTCGAGCAAGTCAAAGACATTGCTGATACCACGAGTATCAGTGAAACCGATTTCCAGCCTGATAAAGTCGACATTTCTGAGCTGAAATATTTGCTTCTAACAAGTAAATCATTTATTGACCATGCAGATGAGTTTCTCAATCTTGATGTTGATTATCCTAAGATCATACCAAAGATTGAAACTAATGGAATAGCCAATACAAAACTCTATTTGGACTGTGCAAACGAACTCGCCGAGCGAAAAAGTCTTCAAGAATCATCACAACTAGTTCACCCTTTATTGCTAACTTGTGTAGGGAATTCAAGATTGCAAATATCTTTGAGCAGCTTGGTTGATGAAGTGAACAATGCAATTGAGAATTTGACATCTTATAGTGAAAATTCTGAGACTAAACTTATTTTGGATAATGTTTGTGCAATGTTGGAGAGAGATATGAATTGCAACAATAGATTGATGAATGGAATATGGAACTGTGGTTGGAGGCATGGATTTTCTTGTGATGAAGTTGAGAAAGTTGTTCATGAAGTAGAAAACATGGTTTTAGGTGGATTAATTGAGGAGATTATTGTAAATTTATGA 2502 0.3701 MYKPFVTCDDPRGVVECGSIRRYKSNSNKMKDKTKSRKTAENIETNKQDKEEKMSSKGSTERGFDPSSLQLVKVSRGAEKLNNMIESWSRGLRYDGRSEDIAKDLLKGALDLQESLEMLQKVQEVSNNMARSKKKQDEERERSRIDAKVNDGIRSTHSNRFVEHNSAYGSSSSCREELKNVIKESLVRQNLFQSTSTSEGLDSASAAFPSTSSSQSSVVWYDKLSDSSSSPNFPRKEKRSNLVAKLMGLEQVPSRTFPSVMQKQLENQKIVNQKRPVFEIDTPKTRKNSLFVERANMEKQKTLREILETTHYNGLLKNSPIREHKLYNHVHHSDDLHNQKFDDLPPIVLMKPRRGTYQEFVETYEPVRQEDFSFRNLKEKTVSSKTFKPREGSTTNMRKDMEENLSKRIIKEERPKRVKEVVEFDVKEIKPVENKKVQKASHRLQASEKVDEKVKVKNINISRKPLEKDVSKAKVVTKAQDQGEIRSSSEKLRKPRSVSRIEKNEIPYKKGTASNSNIITKPKTQKVNNSKELRKSPMKKQRSVDEAEAAKPLDDQLREEDGMSMNVSCKDECTEIKIITTITEDLITEHEEVDTNKTKDNCDSYRHNSSSHDVLMINCEHENDTISAEEALDITSISETGFEQVKDIADTTSISETDFQPDKVDISELKYLLLTSKSFIDHADEFLNLDVDYPKIIPKIETNGIANTKLYLDCANELAERKSLQESSQLVHPLLLTCVGNSRLQISLSSLVDEVNNAIENLTSYSENSETKLILDNVCAMLERDMNCNNRLMNGIWNCGWRHGFSCDEVEKVVHEVENMVLGGLIEEIIVNL 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04059 833 PANTHER OS01G0228800 PROTEIN-RELATED 2 832 - -
Trre3g04059 833 MobiDBLite consensus disorder prediction 509 526 - -
Trre3g04059 833 Coils Coil 33 53 - -
Trre3g04059 833 MobiDBLite consensus disorder prediction 527 552 - -
Trre3g04059 833 MobiDBLite consensus disorder prediction 25 59 - -
Trre3g04059 833 Coils Coil 122 142 - -
Trre3g04059 833 MobiDBLite consensus disorder prediction 478 552 - -
Trre3g04059 833 MobiDBLite consensus disorder prediction 484 507 - -
Trre3g04059 833 Coils Coil 748 768 - -
Trre3g04059 833 MobiDBLite consensus disorder prediction 128 146 - -
Trre3g04059 833 MobiDBLite consensus disorder prediction 24 70 - -
Trre3g04059 833 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04059 Trre-Chr3 52097449 52100472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04059 660 830 TRM (TON1 Recruiting Motif) Superfamily AT3G24630 30.337 6.14e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04059 - - gmx:100797863 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g04059 3 52097449 52100472 Trre3g04059 3 52097449 52100472 ECH