Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04051 ATGGAGGAAGGTGAAGGAGGAGAAAGTGGTTCAAAGAATGTTGTTCCGTCGGAGTTTGTTGTGGCTGTTTCACCGACGGTGGCGGCTGCTACAACGGCGTGGTCGGATGCACCGGCGAAGAAGATAGTGAGGCAGCTTGATTTTAATGCTATGACGGAACAGTCGAAACAACCGCAGCAGCTGTTGCAACAGACGACTGTAATGGTGCAGAAACCGGTGGCTAGTTCGCCTTTGCCGCCGCCGCAGTCGATGATAGGACTTCAACACTCTTCTGTGAGGGTTGGGAAACCGGAATCTCCCAAACCAAAATCAAGGCCTAACTTTGATATGAAAGAAGGTACTCCAAAGAAGCAAAAGCAATGCAACTGTAAACACTCTAAATGCTTAAAACTATATTGTGAATGTTTTGCATCAGGAATATATTGTGACGGTTGCAACTGTGTCAATTGTTTCAACAATGTTGATAATGAAGCTGCTAGACGAGAGGCTGTTGAAGCTACTTTAGAGCGCAATCCAAATGCATTTAGGCCTAAAATTGCGAGCAGCCCTCAAGGAGCACGAGATAGCAGGGAGGAGACTGGGGAAGGTTTAATATTAATAAAACATAACAAGGGATGCATGGACTGCAAGAACTTTGAGGGAAGTGAAGAGCGACAAGCTTTGTTTCATGGAGATCAAAATAACAACACATATATTCAGCAAGCGGCAAATGCTGCCATAACTGGAGCTATTGGTTCCTACGGCTATTCATCACCTCCAGTATCAAAGAAAAGAAAAGGTCAGGAACTTTTCTTGTGGCCTACATCCAAGGATCCATCAGTTAGCAAGTCGGGACAACAGGTAAACCATGTCAAAGGTCCAGCAGCAGCATCCTCATCATTGTCACCTGTATCAAATGCTCGTGTTGCAAATGCAACATTAGGTCAAAGTCCACAAAAATTAAAGTACAGGTCTCTTTTAGCAGACATTGTACAACCACACCACCTCAAAGAGCTTTGTTCAGTTCTGGTGCTAGTATCTGGACAAGCCGCAAAGACACTTGCAGACCAGAAAAGTTCAGCAGAAAAACGTACAGAAGATCAGACAGAAACTTCCCTTGCTGCTTCAACTCAAGAGCAATTACCTAGTCAAAAAGACGTTGATGTTGAAAAGGCTATGGATGATGATTGTTCGAGTGCAAATCAAACAGATAAGATCAGCCCAAGTAATTCCTGTTCAGATGGTGCCGATGTCCCGAAAGGGAGGCCAATGTCTCCTGGGACTTTAGCTTTGATGTGTGATGAGCAAGATACAATGTTCATGAGAGCTTCCTCTCCCATTGGGCCTATGAACCATGCTTGCAACACATCTTCGCAATTTCCTAGTGGACAAGGAGTGACAGAGGTCTATGCTGAGCAAGAAAGGATTGTATTAACACAGTTTAGAGATTTTCTCAATAGAGTTATCACTATGGGAGAAATAAATGAGACAAAGTGTTCTTCATTGGCTAGAAGTGACTTAGAGAATCAAAAGGACCCAATCAACAATGAAACTGGAAATTCCAGTACTGACATAGTACATCAGCAGGAAGCTATTAGCAATGGTGATCCCAAAACCGTAGTTCCACCTATGGACACAATTTCAACACCTGTGGTCCTTGGTGATGCTGTAGCTGAAAATGGAGAAACTAAGCTGAAGATGGAAAAAGAACTATGA 1695 0.4354 MEEGEGGESGSKNVVPSEFVVAVSPTVAAATTAWSDAPAKKIVRQLDFNAMTEQSKQPQQLLQQTTVMVQKPVASSPLPPPQSMIGLQHSSVRVGKPESPKPKSRPNFDMKEGTPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVDNEAARREAVEATLERNPNAFRPKIASSPQGARDSREETGEGLILIKHNKGCMDCKNFEGSEERQALFHGDQNNNTYIQQAANAAITGAIGSYGYSSPPVSKKRKGQELFLWPTSKDPSVSKSGQQVNHVKGPAAASSSLSPVSNARVANATLGQSPQKLKYRSLLADIVQPHHLKELCSVLVLVSGQAAKTLADQKSSAEKRTEDQTETSLAASTQEQLPSQKDVDVEKAMDDDCSSANQTDKISPSNSCSDGADVPKGRPMSPGTLALMCDEQDTMFMRASSPIGPMNHACNTSSQFPSGQGVTEVYAEQERIVLTQFRDFLNRVITMGEINETKCSSLARSDLENQKDPINNETGNSSTDIVHQQEAISNGDPKTVVPPMDTISTPVVLGDAVAENGETKLKMEKEL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04051 564 SMART CXC_2 116 156 IPR033467 -
Trre3g04051 564 MobiDBLite consensus disorder prediction 347 415 - -
Trre3g04051 564 MobiDBLite consensus disorder prediction 377 391 - -
Trre3g04051 564 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 118 153 IPR005172 -
Trre3g04051 564 ProSiteProfiles CRC domain profile. 117 206 IPR005172 -
Trre3g04051 564 MobiDBLite consensus disorder prediction 96 118 - -
Trre3g04051 564 MobiDBLite consensus disorder prediction 269 296 - -
Trre3g04051 564 MobiDBLite consensus disorder prediction 392 407 - -
Trre3g04051 564 PANTHER TESMIN/TSO1-RELATED 206 487 IPR028307 -
Trre3g04051 564 MobiDBLite consensus disorder prediction 91 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04051 Trre-Chr3 52003492 52009903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04051 38 546 CPP Transcription Factor Family AT4G29000 47.811 3.19e-156 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre3g04051 TCR 4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04051 - - gmx:100777698 752.281