Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04050 ATGGAGGAAGGTGAAGGAGGAGAAAGTGGTTCAAAGAATGTTGTTCCGTCGGAGTTTGTTGTGGCTGTTTCACCGACGGTGGCGGCTGCTACAACGGCGTGGTCGGATGCACCGGCGAAGAAGATAGTGAGGCAGCTTGATTTTAATGCTATGACGGAACAGTCGAAACAACCGCAGCAGCTGTTGCAACAGACGACTGTAATGGTGCAGAAACCGGTGGCTAGTTCGCCTTTGCCGCCGCCGCAGTCGATGATAGGACTTCAACACTCTTCTGTGAGGGTTGGGAAACCGGAATCTCCCAAACCAAAATCAAGGCCTAACTTTGATATGAAAGAAGGTACTCCAAAGAAGCAAAAGCAATGCAACTGTAAACACTCTAAATGCTTAAAACTATATTGTGAATGTTTTGCATCAGGAATATATTGTGACGGTTGCAACTGTGTCAATTGTTTCAACAATGTTGATAATGAAGCTGCTAGACGAGAGGCTGTTGAAGCTACTTTAGAGCGCAATCCAAATGCATTTAGGCCTAAAATTGCGAGCAGCCCTCAAGGAGCACGAGATAGCAGGGAGGAGACTGGGGAAGGTTTAATATTAATAAAACATAACAAGGGGTGCCATTGTAAAAAATCTGGCTGTCTTAAGAAGTATTGTGAATGCTTCCAAGCCAACGTTCTTTGTTCTGAGAATTGTAGATGCATGGACTGCAAGAACTTTGAGGGAAGTGAAGAGCGACAAGCTTTGTTTCATGGAGATCAAAATAACAACACATATATTCAGCAAGCGGCAAATGCTGCCATAACTGGAGCTATTGGTTCCTACGGCTATTCATCACCTCCAGTATCAAAGAAAAGAAAAGGTCAGGAACTTTTCTTGTGGCCTACATCCAAGGATCCATCAGTTAGCAAGTCGGGACAACAGGTAAACCATGTCAAAGGTCCAGCAGCAGCATCCTCATCATTGTCACCTGTATCAAATGCTCGTGTTGCAAATGCAACATTAGGTCAAAGTCCACAAAAATTAAAGTACAGGTCTCTTTTAGCAGACATTGTACAACCACACCACCTCAAAGAGCTTTGTTCAGTTCTGGTGCTAGTATCTGGACAAGCCGCAAAGACACTTGCAGACCAGAAAAGTTCAGCAGAAAAACGTACAGAAGATCAGACAGAAACTTCCCTTGCTGCTTCAACTCAAGAGCAATTACCTAGTCAAAAAGACGTTGATGTTGAAAAGGCTATGGATGATGATTGTTCGAGTGCAAATCAAACAGATAAGATCAGCCCAAGTAATTCCTGTTCAGATGGTGCCGATGTCCCGAAAGGGAGGCCAATGTCTCCTGGGACTTTAGCTTTGATGTGTGATGAGCAAGATACAATGTTCATGAGAGCTTCCTCTCCCATTGGGCCTATGAACCATGCTTGCAACACATCTTCGCAATTTCCTAGTGGACAAGGAGTGACAGAGGTCTATGCTGAGCAAGAAAGGATTGTATTAACACAGTTTAGAGATTTTCTCAATAGAGTTATCACTATGGGAGAAATAAATGAGACAAAGTGTTCTTCATTGGCTAGAAGTGACTTAGAGAATCAAAAGGACCCAATCAACAATGAAACTGGAAATTCCAGTACTGACATAGTACATCAGCAGGAAGCTATTAGCAATGGTGATCCCAAAACCGTAGTTCCACCTATGGACACAATTTCAACACCTGTGGTCCTTGGTGATGCTGTAGCTGAAAATGGAGAAACTAAGCTGAAGATGGAAAAAGAACTATGA 1776 0.433 MEEGEGGESGSKNVVPSEFVVAVSPTVAAATTAWSDAPAKKIVRQLDFNAMTEQSKQPQQLLQQTTVMVQKPVASSPLPPPQSMIGLQHSSVRVGKPESPKPKSRPNFDMKEGTPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVDNEAARREAVEATLERNPNAFRPKIASSPQGARDSREETGEGLILIKHNKGCHCKKSGCLKKYCECFQANVLCSENCRCMDCKNFEGSEERQALFHGDQNNNTYIQQAANAAITGAIGSYGYSSPPVSKKRKGQELFLWPTSKDPSVSKSGQQVNHVKGPAAASSSLSPVSNARVANATLGQSPQKLKYRSLLADIVQPHHLKELCSVLVLVSGQAAKTLADQKSSAEKRTEDQTETSLAASTQEQLPSQKDVDVEKAMDDDCSSANQTDKISPSNSCSDGADVPKGRPMSPGTLALMCDEQDTMFMRASSPIGPMNHACNTSSQFPSGQGVTEVYAEQERIVLTQFRDFLNRVITMGEINETKCSSLARSDLENQKDPINNETGNSSTDIVHQQEAISNGDPKTVVPPMDTISTPVVLGDAVAENGETKLKMEKEL 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04050 591 MobiDBLite consensus disorder prediction 419 434 - -
Trre3g04050 591 SMART CXC_2 116 156 IPR033467 -
Trre3g04050 591 SMART CXC_2 201 242 IPR033467 -
Trre3g04050 591 ProSiteProfiles CRC domain profile. 117 241 IPR005172 -
Trre3g04050 591 MobiDBLite consensus disorder prediction 96 118 - -
Trre3g04050 591 PANTHER TESMIN/TSO1-RELATED 54 514 IPR028307 -
Trre3g04050 591 MobiDBLite consensus disorder prediction 374 442 - -
Trre3g04050 591 MobiDBLite consensus disorder prediction 404 418 - -
Trre3g04050 591 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 204 238 IPR005172 -
Trre3g04050 591 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 118 153 IPR005172 -
Trre3g04050 591 MobiDBLite consensus disorder prediction 296 323 - -
Trre3g04050 591 MobiDBLite consensus disorder prediction 91 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04050 Trre-Chr3 52003492 52009903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04050 38 573 CPP Transcription Factor Family AT4G29000 51.839 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre3g04050 TCR 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04050 - - gmx:100777698 829.32