Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04046 ATGTCAACTGCACCGGCGCCATCTTCGCCGCCGTCTGGGAACGCCACCGCGCCTCCGCCGTCAACCCCTGCTGCACCACCACCTGCAACACCTTCCTCACCACCACCTGCAACACCTTCATCACCACCTCCGGCTGTTCCGTCGTCACCTCCGCCGGCTACTCCCTCTGCTCCTCCTCCGGCGACTCCTTCAAAACCACCTCCGACGACTACTCCGTCAGCGCCTCCACCAGCTACACCTTCAATTTCTCCACCAGCACCAACAACTCCGTCGACAACTCCTCCGTCGAGTTCGCCATCACCACCGTCACCACCGTCGTCGACTCCCGGAAGTGGCACTACTCCGAGTCCACCATCACCACCTTCCACCAAAACTCCACCAAGCTCTGATCGAAGCCCAACACCACCTTCCTCCAAATCTCCACCATCACCACCTTCATCATCATCGAGTATTTCTACCGGAGTTGTCGTCGGAATCGCCGTCGGTGCGGTGGCGATTCTTGTGGTTTTGAGCATTCTGTGCATTTGCTGTAGGAAGAAAAAGAGAAGACGTGATGAAGAATACTATGGTCAACAGCATCACCAACCACCACCACCTCAGGGATCCAAAGTTGATCCTTATGGTGGTCCACCACAACAATGGCAACATAATGCTTACCCTCCGTCAGATCATGTAGTTTCAACAATCCCTAAGCCGCCACCTCCTGCGCCAATACCATCGCGACCGCCATCTCATGTTGCGCCGCCACCTCCACCTTTCATAAGCAGCAGTGGTGGTTCCGGATCAAACTACTCAGGCGGCGAACTACTTCCACCTCCTTCTCCAGGCCTTGCATTTAGTTCCGCGAAGAGCACTTTTACTTATGAGGAGTTAGCACGTGCAACTGATGGCTTCTCTGATGCTAACCTCCTCGGACAAGGTGGATTTGGATATGTTCATAGAGGTATACTCCCAAATGGTAAAGAGGTTGCTGTTAAGCAGCTAAAAGCGGGAAGTGGACAAGGAGAACGCGAGTTTCAAGCTGAAGTAGAGATTATTAGTCGTGTACATCACAAGCATCTTGTTTCACTTGTTGGATACTGCAGCACTGGATTTCAGAGGCTACTTGTTTATGAATTTGTTCCTAACAATACATTGGAATTCCATCTACATGGAAAAGGACGACCAACAATGGATTGGGCAACAAGACTGAGAATTGCATTAGGATCTGCCAAAGGACTGGCTTATCTTCATGAAGATTGTCATCCTAAGATCATCCACCGTGATATCAAAGCTGCTAACATTCTTCTGGATTTTAAGTTTGAAGCGAAGGTCGCTGATTTTGGTCTCGCAAAGATTGCTTCGGATCTGAATACTCATGTTTCTACTCGAGTGATGGGGACTTTTGGATATTTGGCTCCGGAATACGCAGCAAGTGGAAAACTTACAGACAAATCAGATGTTTTCTCGTATGGAGTCATGCTCCTCGAGTTATTAACTGGACGACGTCCGGTTGATAAGAACCAGACTTTCATGGAGGATAGTTTGGTAGAATGGGCTAGGCCTTTGCTCATGCGTGCTTTAGAAGAAGATAATCTTGATTCTCTAATTGATCCAAGGCTGCAGAATGAATTTGACCCTAATGAGATGACTCGTATGGTGGCATGCGCTGCAGCTTGCACGCGTCACTCAGCAAAGCGTCGACCAAGAATGAGTCAGGTCGTGCGCGCTCTCGAAGGAGATGTGTCACTAGCAGATCTTAATGAAGGGATTAGACCAGGACACAGTTCTGTTTACAGTTCTCATGAAAGCTCCGATTACGATACTCAACAATACAAAGAAGACATGATAAAGTTCAGAAAAATGGCATTAGGAACTCAAGAGTACGCTGGAAGCAGCGAATACAGTGCGGCTACAAGCGAGTACGGTCTAAACCCGTCCGGCTCAAGCAGCGAAAACCAAAGTCGCCAAACAACTAGGGAAATGGAAATGAGAAAGCTGAAGAACAGTCAAGGATTCAGTGGAAGTTCATGA 2013 0.4898 MSTAPAPSSPPSGNATAPPPSTPAAPPPATPSSPPPATPSSPPPAVPSSPPPATPSAPPPATPSKPPPTTTPSAPPPATPSISPPAPTTPSTTPPSSSPSPPSPPSSTPGSGTTPSPPSPPSTKTPPSSDRSPTPPSSKSPPSPPSSSSSISTGVVVGIAVGAVAILVVLSILCICCRKKKRRRDEEYYGQQHHQPPPPQGSKVDPYGGPPQQWQHNAYPPSDHVVSTIPKPPPPAPIPSRPPSHVAPPPPPFISSSGGSGSNYSGGELLPPPSPGLAFSSAKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCSTGFQRLLVYEFVPNNTLEFHLHGKGRPTMDWATRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKIASDLNTHVSTRVMGTFGYLAPEYAASGKLTDKSDVFSYGVMLLELLTGRRPVDKNQTFMEDSLVEWARPLLMRALEEDNLDSLIDPRLQNEFDPNEMTRMVACAAACTRHSAKRRPRMSQVVRALEGDVSLADLNEGIRPGHSSVYSSHESSDYDTQQYKEDMIKFRKMALGTQEYAGSSEYSAATSEYGLNPSGSSSENQSRQTTREMEMRKLKNSQGFSGSS 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04046 670 FunFam proline-rich receptor-like protein kinase PERK1 276 373 - -
Trre3g04046 670 MobiDBLite consensus disorder prediction 11 143 - -
Trre3g04046 670 SMART serkin_6 298 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04046 670 Gene3D Phosphorylase Kinase; domain 1 274 373 - -
Trre3g04046 670 PRINTS Proline rich extensin signature 24 36 - -
Trre3g04046 670 PRINTS Proline rich extensin signature 39 60 - -
Trre3g04046 670 PRINTS Proline rich extensin signature 4 20 - -
Trre3g04046 670 PRINTS Proline rich extensin signature 60 76 - -
Trre3g04046 670 Gene3D Transferase(Phosphotransferase) domain 1 374 581 - -
Trre3g04046 670 FunFam Proline-rich receptor-like protein kinase PERK1 374 582 - -
Trre3g04046 670 MobiDBLite consensus disorder prediction 226 255 - -
Trre3g04046 670 SUPERFAMILY Protein kinase-like (PK-like) 277 571 IPR011009 -
Trre3g04046 670 Pfam Protein tyrosine and serine/threonine kinase 303 571 IPR001245 GO:0004672|GO:0006468
Trre3g04046 670 MobiDBLite consensus disorder prediction 1 152 - -
Trre3g04046 670 MobiDBLite consensus disorder prediction 623 650 - -
Trre3g04046 670 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 162 638 IPR047117 -
Trre3g04046 670 ProSiteProfiles Protein kinase domain profile. 298 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g04046 670 MobiDBLite consensus disorder prediction 623 670 - -
Trre3g04046 670 MobiDBLite consensus disorder prediction 187 270 - -
Trre3g04046 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Trre3g04046 670 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04046 Trre-Chr3 51964457 51967909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04046 117 653 Trihelix Transcription Factor Family AT1G70460 49.907 3.40e-172 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trre3g04046 PK_Tyr_Ser-Thr 7.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04046 - - gmx:100781944 811.216