Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04031 ATGGTTAATGAACAAAACACAGATAACCTTATCAAGTGGGGTCCATCTAACAACAGTTTCATCGTCCTTGATCCGCTTCAATTCTCTCACTCTCTTCTTCCTGTTTTCTTCAAACACAACAATTTCTCTAGCTTTGTTCGTCAACTCAACACATACGGTTTTAGAAAAGTGGATCCGGATCGGTGGGAATTTGCGAATGAGTATTTTCTAAGAGGACAAAAGCACTTATTGAAGAACATAGTTAGGAAGAAGCACGTTGGTGGAGTTGGAAATGGAAGGAATAATAATAATTATTATAACAATAATAATTATTTTAATGAAGTGAAATTTGAAGATTTAGAAGAAGATGAAGTAATGATGAAAGAAATATTGAAGCTAAAAGAAGAACAAAGAATTTTAGATGAAGAGCTTCAAGGAATGAATAAGAGATTAGAAACAACAGAAAAAAGACCACAACAAATGATGGCTTTTCTTTGCAATGTAGTTGAAGATCCTCAAATTCTATCAAGAATATTAAATGAGAGAGAGAAGCAAATAATTGTTGAGAAAAAAAGACGACGGTTTATTTCTCCGCCGGAGATGGCGGCGATGACGGCGGCGACGACGTCAACTTCTTCGTCGTCTTCCGGCATGGGGATAGCGAATTCAGTTAAGTTGGAGTTTGATGAAGACGAGGTAACCGTTGCGAATAATATGATGTCGTCTTCGCCGGAGATGGGTTTTGAAATTGATTATGACCACCGTGCGCCGCCGCGGGTGTTGACTCCGTCGGGAGATTGGTGGGGGCAGACGCAGCTTGGACAAATGGGTTTTGTGAATGATTGTGGAGTTGGTCCGACGCCGTTGACGGTGGTGTCTCCGGCGCCGATGATGGGTGGTGGGAATAGTGATAGTAGAACGGAGCGTGTGGGAATTTTCAATGAAATTGCGGCGGAGAATAGTAAGTTGCCACCTTATCCTTTTTCATTGTTAGAAGGTGGCTTTTAG 987 0.4103 MVNEQNTDNLIKWGPSNNSFIVLDPLQFSHSLLPVFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEYFLRGQKHLLKNIVRKKHVGGVGNGRNNNNYYNNNNYFNEVKFEDLEEDEVMMKEILKLKEEQRILDEELQGMNKRLETTEKRPQQMMAFLCNVVEDPQILSRILNEREKQIIVEKKRRRFISPPEMAAMTAATTSTSSSSSGMGIANSVKLEFDEDEVTVANNMMSSSPEMGFEIDYDHRAPPRVLTPSGDWWGQTQLGQMGFVNDCGVGPTPLTVVSPAPMMGGGNSDSRTERVGIFNEIAAENSKLPPYPFSLLEGGF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04031 328 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 213 IPR027725 -
Trre3g04031 328 SUPERFAMILY "Winged helix" DNA-binding domain 1 83 IPR036390 -
Trre3g04031 328 PRINTS Heat shock factor (HSF) domain signature 45 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre3g04031 328 PRINTS Heat shock factor (HSF) domain signature 32 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre3g04031 328 FunFam Heat stress transcription factor B-4 1 84 - -
Trre3g04031 328 Pfam HSF-type DNA-binding 1 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre3g04031 328 Coils Coil 123 150 - -
Trre3g04031 328 ProSitePatterns HSF-type DNA-binding domain signature. 33 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre3g04031 328 Gene3D - 1 84 IPR036388 -
Trre3g04031 328 SMART hsfneu3 1 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04031 Trre-Chr3 51639408 51640852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04031 1 187 HSF AT3G24520 58.639 5.05e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre3g04031 HSF_DNA-bind 9.8e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04031 K09419 - gmx:100794896 331.643