Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g04030 ATGGGGATGGAGCAAAACAACGTAATCGCACCGTTCATTATGAAGACATATCACATGGTTAATGAACAAAACACAGATAACCTTATCAAGTGGGGTCCATCTAACAACAGTTTCATCGTCCTTGATCCGCTTCAATTCTCTCACTCTCTTCTTCCTGTTTTCTTCAAACACAACAATTTCTCTAGCTTTGTTCGTCAACTCAACACATACGGTTTTAGAAAAGTGGATCCGGATCGGTGGGAATTTGCGAATGAGTATTTTCTAAGAGGACAAAAGCACTTATTGAAGAACATAGTTAGGAAGAAGCACGTTGGTGGAGTTGGAAATGGAAGGAATAATAATAATTATTATAACAATAATAATTATTTTAATGAAGTGAAATTTGAAGATTTAGAAGAAGATGAAGTAATGATGAAAGAAATATTGAAGCTAAAAGAAGAACAAAGAATTTTAGATGAAGAGCTTCAAGGAATGAATAAGAGATTAGAAACAACAGAAAAAAGACCACAACAAATGATGGCTTTTCTTTGCAATGTAGTTGAAGATCCTCAAATTCTATCAAGAATATTAAATGAGAGAGAGAAGCAAATAATTGTTGAGAAAAAAAGACGACGGTTTATTTCTCCGCCGGAGATGGCGGCGATGACGGCGGCGACGACGTCAACTTCTTCGTCGTCTTCCGGCATGGGGATAGCGAATTCAGTTAAGTTGGAGTTTGATGAAGACGAGGTAACCGTTGCGAATAATATGATGTCGTCTTCGCCGGAGATGGGTTTTGAAATTGATTATGACCACCGTGCGCCGCCGCGGGTGTTGACTCCGTCGGGAGATTGGTGGGGGCAGACGCAGCTTGGACAAATGGGTTTTGTGAATGATTGTGGAGTTGGTCCGACGCCGTTGACGGTGGTGTCTCCGGCGCCGATGATGGGTGGTGGGAATAGTGATAGTAGAACGGAGCGTGTGGGAATTTTCAATGAAATTGCGGCGGAGAATAGTAAGTTGCCACCTTATCCTTTTTCATTGTTAGAAGGTGGCTTTTAG 1041 0.4111 MGMEQNNVIAPFIMKTYHMVNEQNTDNLIKWGPSNNSFIVLDPLQFSHSLLPVFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEYFLRGQKHLLKNIVRKKHVGGVGNGRNNNNYYNNNNYFNEVKFEDLEEDEVMMKEILKLKEEQRILDEELQGMNKRLETTEKRPQQMMAFLCNVVEDPQILSRILNEREKQIIVEKKRRRFISPPEMAAMTAATTSTSSSSSGMGIANSVKLEFDEDEVTVANNMMSSSPEMGFEIDYDHRAPPRVLTPSGDWWGQTQLGQMGFVNDCGVGPTPLTVVSPAPMMGGGNSDSRTERVGIFNEIAAENSKLPPYPFSLLEGGF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g04030 346 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre3g04030 346 Gene3D - 4 102 IPR036388 -
Trre3g04030 346 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre3g04030 346 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre3g04030 346 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre3g04030 346 Coils Coil 344 346 - -
Trre3g04030 346 FunFam Heat stress transcription factor B-4 4 102 - -
Trre3g04030 346 SUPERFAMILY "Winged helix" DNA-binding domain 9 101 IPR036390 -
Trre3g04030 346 ProSitePatterns HSF-type DNA-binding domain signature. 51 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre3g04030 346 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre3g04030 346 Coils Coil 141 168 - -
Trre3g04030 346 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 231 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g04030 Trre-Chr3 51639354 51640852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g04030 8 205 HSF AT3G24520 59.901 2.28e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre3g04030 HSF_DNA-bind 3.2e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g04030 K09419 - gmx:100794896 354.755